View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_12 (Length: 392)
Name: NF1355_1D_low_12
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 84 - 392
Target Start/End: Complemental strand, 4644335 - 4644027
Alignment:
| Q |
84 |
tgattgacaattcaggaactgaaccgagttcggttcagttgagttcacgaattatccttgattgtttggttctttccggtgcagctctgttttgttcaat |
183 |
Q |
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| T |
4644335 |
tgattgacaattcaggaactgaaccgagttcggttcagttgagttcacgaattatccttgattgtttggttctttccggtgcagctctgttttgttcaat |
4644236 |
T |
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| Q |
184 |
ttaacagttcttcagnnnnnnnaaacagtcatactattcaatttggttcgattttgggcttttttcaacattcctaattatcagttaataataaaaattt |
283 |
Q |
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| T |
4644235 |
ttaacagttcttcagtttttttaaacagtcatactattcaatttggttcgattttgggcttttctcaacattcctaattatcagttaataataaaaattt |
4644136 |
T |
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| Q |
284 |
gttacaatgaggtctgcaaaaaatgtcgaaaaagtatagtttgnnnnnnnaaaggtgactatgaacagttcgattacgttttaccaaattgttttaacta |
383 |
Q |
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| T |
4644135 |
gttacaatgaggtctgcaaaaaatgtcgaaaaagtatagtttgtttttttaaaggtgactatgaacagttcggttacgttttaccaaattgttttaacta |
4644036 |
T |
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| Q |
384 |
ttcagtttg |
392 |
Q |
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| T |
4644035 |
ttcagtttg |
4644027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 7426046 - 7426013
Alignment:
| Q |
242 |
cttttttcaacattcctaattatcagttaataat |
275 |
Q |
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| T |
7426046 |
cttttttcaacagtcctaattatcagttaataat |
7426013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 51215834 - 51215749
Alignment:
| Q |
206 |
aaacagtcatactattcaatttggttcgattttgggcttttttcaacattcctaattatcagttaataataaaaatttgttacaat |
291 |
Q |
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| T |
51215834 |
aaacagtcataaaattcaatttggtttcgtttttggttttcttcaacagccctaattatcaattaataatagcaatttggtacaat |
51215749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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