View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_13 (Length: 391)
Name: NF1355_1D_low_13
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 44309176 - 44308809
Alignment:
| Q |
7 |
tgcagagtggtacaatttctctgtttagggtaaacatatattcacgaaaataataacaagtaatgactctcaataatgannnnnnnnnnnnnnnncatga |
106 |
Q |
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| T |
44309176 |
tgcagattggtacaatttctctgtttagggtaaacatatattcacgaaaataataacaagtaatgactctcaataatgattttgttttttgttttcatga |
44309077 |
T |
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| Q |
107 |
agacagtttataaaatcaagtttttgtttgatgatcttaagataattagacttgatgtgtacacttaatatttgatagttctgtagttgaatagaaaata |
206 |
Q |
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| T |
44309076 |
agacagtttataaaatcaagtttttgtttgatgatcttaagataattagacttgatgtgtacacttaatatttgatagttctgtagttgaatagaaaata |
44308977 |
T |
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| Q |
207 |
agaattaaagagcacgttttatattggcatcaattttcatcagtctgtcaagcaaactaaccatataccaaagaattctaaaagcataggcttatgcaat |
306 |
Q |
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| T |
44308976 |
agaattaaagagcaagttttatattggcatcaattttcatcagcctgtcaagcaaactaaccatataccaaagaattctaaaagcataggcttatgcaat |
44308877 |
T |
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| Q |
307 |
tcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaataa |
374 |
Q |
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| T |
44308876 |
tcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaataa |
44308809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 169 - 372
Target Start/End: Original strand, 44458130 - 44458334
Alignment:
| Q |
169 |
acttaatatttgatagttctgtagttgaatagaaaataagaattaaagagcacgtttt-atattggcatcaattttcatcagtctgtcaagcaaactaac |
267 |
Q |
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| T |
44458130 |
acttcatatttgatagttctgcagttgaatagaaaatgagaattaaagagcaagtttttatattggcatcaattctcatcagcctgtcaagcaaactaac |
44458229 |
T |
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| Q |
268 |
catataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatatta |
367 |
Q |
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| T |
44458230 |
catataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatatta |
44458329 |
T |
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| Q |
368 |
agaat |
372 |
Q |
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||||| |
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| T |
44458330 |
agaat |
44458334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 169 - 372
Target Start/End: Original strand, 44465663 - 44465867
Alignment:
| Q |
169 |
acttaatatttgatagttctgtagttgaatagaaaataagaattaaagagcacgtttt-atattggcatcaattttcatcagtctgtcaagcaaactaac |
267 |
Q |
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|||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
44465663 |
acttcatatttgatagttctgcagttgaatagaaaatgagaattaaagagcaagtttttatattggcatcaattctcatcagcctgtcaagcaaactaac |
44465762 |
T |
|
| Q |
268 |
catataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatatta |
367 |
Q |
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| T |
44465763 |
catataccaaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatatta |
44465862 |
T |
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| Q |
368 |
agaat |
372 |
Q |
| |
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||||| |
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| T |
44465863 |
agaat |
44465867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 182 - 372
Target Start/End: Original strand, 27466739 - 27466930
Alignment:
| Q |
182 |
tagttctgtagttgaatagaaaataagaattaaagagcacgttttatattggcatcaattttcatcagtctgtcaagcaaacta------accatatacc |
275 |
Q |
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|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||| |
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| T |
27466739 |
tagttctgtagttgaatagaaaatgacaattaaagagcacattttatattggcatcaattttcatcaacccgtcaagcaaactaaccattaccatatacc |
27466838 |
T |
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| Q |
276 |
aaagaattctaaaagcataggcttatgcaattcacaatttttaaatgagaaatcaaaactttcgcataattaatctcaatcgctaaatattaagaat |
372 |
Q |
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| T |
27466839 |
aaagaattctagaagcata-acttatgcatttcacaaattttacatgagaaatcaaaactttcgca----taatctcaatccctaaatataaagaat |
27466930 |
T |
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