View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355_1D_low_17 (Length: 357)

Name: NF1355_1D_low_17
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355_1D_low_17
NF1355_1D_low_17
[»] chr2 (3 HSPs)
chr2 (21-357)||(40552380-40552716)
chr2 (160-357)||(40570435-40570641)
chr2 (22-150)||(40570702-40570830)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 40552716 - 40552380
Alignment:
Q  21 atgtcgggtttgtctaatgttcatttagcaactgaagatgaacatcagctgaatagtatatgcggtctccctgctaatcattctgagcaatcttctgtgg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40552716 atgtcgggtttgtctaatgttcatttagcaactgaagatgaacatcagctgaatagtatatgcggtctccccgctaatcattctgagcaatcttctgtgg 40552617  T
Q  121 ttccaaataaagatgttgggcaatcacacttaaattcaaatcttgattcgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40552616 ttccaaataaagatgttgggcaatcacacttaaattcaaatcttgatttgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttc 40552517  T
Q  221 aactcctttggcgatgaatagtcatcctatccaatctataaccccttcaccttccagaagacttccacatttgtcccatgatattgaattcaaaagaata 320  Q
    || ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40552516 aattcctttggcgatgaaaagtcatcctatccaatctaaaaccccttcaccttccagaagacttccacatttgtcccatgatattgaattcaaaagaata 40552417  T
Q  321 caaaaaataatagagaaaacatcgaaaaacaatgaag 357  Q
    |||||||||||||||||||||||||||||||||||||    
T  40552416 caaaaaataatagagaaaacatcgaaaaacaatgaag 40552380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 357
Target Start/End: Complemental strand, 40570641 - 40570435
Alignment:
Q  160 atcttgattcgcttacagccagcagagtaagagcacagtctgccaacccaagaaatttttcaactcctttggcgatgaatagtcatcctatccaatctat 259  Q
    ||||||||| |||||||||||| |||||||||||||||| || | ||  ||||||||| |||| |||||||| |||||||| |||||| || |||||||     
T  40570641 atcttgatttgcttacagccagtagagtaagagcacagtgtggctacagaagaaatttgtcaaatcctttggagatgaataatcatccaattcaatctac 40570542  T
Q  260 aaccccttcaccttccagaagacttccacatttgtcccatgat---------attgaattcaaaagaatacaaaaaataatagagaaaacatcgaaaaac 350  Q
    | |||||||| |||||||||| |||| |||||||||| |||||         ||||||||  |||||||||||||| |||||||| || | |||||||||    
T  40570541 acccccttcatcttccagaaggcttcaacatttgtcctatgatccgctgaacattgaatttgaaagaatacaaaaagtaatagagcaatcttcgaaaaac 40570442  T
Q  351 aatgaag 357  Q
     ||||||    
T  40570441 catgaag 40570435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 40570830 - 40570702
Alignment:
Q  22 tgtcgggtttgtctaatgttcatttagcaactgaagatgaacatcagctgaatagtatatgcggtctccctgctaatcattctgagcaatcttctgtggt 121  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||  ||    |||||||  || |||||||||||| | ||||||||||    
T  40570830 tgtcgggtttttctactgttcatttagcaactgaagatgaacatcagctgaacagcgtacatagtctccccactcatcattctgagccaacttctgtggt 40570731  T
Q  122 tccaaataaagatgttgggcaatcacact 150  Q
    |||||| ||||||| |||||| |||||||    
T  40570730 tccaaacaaagatgctgggcagtcacact 40570702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University