View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_2 (Length: 509)
Name: NF1355_1D_low_2
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 22 - 498
Target Start/End: Complemental strand, 39813918 - 39813442
Alignment:
| Q |
22 |
aaattgttgctttggttttgtacatgaacaatacgccatttagaatctagtggctggactcttccaatctgacctttctcctttacagcttataattgtt |
121 |
Q |
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| T |
39813918 |
aaattgttgctttggttttgtacatgaacaatacgccatttagaatctagtgtctggactcttccaatctgacctttctcctttacagcttataattgtt |
39813819 |
T |
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| Q |
122 |
gttattttcaacatacagattagaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatatgggaaattccggcata |
221 |
Q |
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| T |
39813818 |
gttattttcaacatacagattagaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatatgggaaattccggcata |
39813719 |
T |
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| Q |
222 |
gccatctacgaccgcatgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaaccccta |
321 |
Q |
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| T |
39813718 |
gccatctacgaccgcatgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaaccccta |
39813619 |
T |
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| Q |
322 |
cagacgagtttgctaaacacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggctattatgta |
421 |
Q |
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| T |
39813618 |
cagacgagtttgctaaacacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggctattatgta |
39813519 |
T |
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| Q |
422 |
ctatttacctctctgtgttagagactttcttttgaagaaagcaatgaaataatgatctacactcgtgatgtccatct |
498 |
Q |
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| T |
39813518 |
ctatttacctctctgtgttagagactttcttttgaagaaagcaatgaaataatgatctacactcgtgctgtccatct |
39813442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 117 - 483
Target Start/End: Complemental strand, 39816701 - 39816335
Alignment:
| Q |
117 |
ttgttgttattttcaacatacagattagaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatatgggaaattccg |
216 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39816701 |
ttgttgttattttcaacaaacagattggaacttggacattttggaattgatgttgtgaatgttgtccctggagctgtgaagtcaaatattggaaattccg |
39816602 |
T |
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| Q |
217 |
gcatagccatctacgaccgcatgccagagtggaaattgttcaaaccatttgaagcagtaatccgagagagagctctactgtctcggaagttaagacaaac |
316 |
Q |
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||||||| |||||| |||||||||| ||||||||| | ||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||| |
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| T |
39816601 |
gcatagctatctacaaccgcatgccggagtggaaactattcaaaccatttgaagcagcaatccgagagagagctctattgtctcaggggttaagatcaac |
39816502 |
T |
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| Q |
317 |
ccctacagacgagtttgctaaacacaccatagctgctatcctaaggaagaaaccacctgcatggttctcttatggcaattattctactgtcatggctatt |
416 |
Q |
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| T |
39816501 |
ccctacagatgagtttgctagacacaccgtagctgctgtccttaggaagaaaccacctgcatggttctcatatggccgttattctactgccatggctgtt |
39816402 |
T |
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| Q |
417 |
atgtactatttacctctctgtgttagagactttcttttgaagaaagcaatgaaataatgatctacac |
483 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
39816401 |
atgtaccatttacctctctgtgttagagactttctttttaagaaagcaatgaaatgttgatctacac |
39816335 |
T |
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