View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_20 (Length: 344)
Name: NF1355_1D_low_20
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 70 - 307
Target Start/End: Original strand, 35113524 - 35113763
Alignment:
| Q |
70 |
atgaaagaacaaggcaagaacataattaaccacatatttgttctttgcaaatcctattgtcaaatattgatgtcaaacatccgtataag--tgtcacnnn |
167 |
Q |
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| T |
35113524 |
atgaaagaacaaggcaagaacataattaaccacacatttgttctttgcaaatcctattgtcaaatattgatgtcaaacatccgtataagagtgtcacttt |
35113623 |
T |
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| Q |
168 |
nnnnatcaggtatgtatacatgccatggcaacaatgtaacatgatcccccgaaaaaataatgtaaaatgatcatttatctacaaatatagttgcttgaat |
267 |
Q |
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| T |
35113624 |
ttt-atcaggtatgtatacatgtcatggcaacaatgtaacatgatccccctaaaaaataatgtaaaatgatcatttatttacaaatatagttgcttgaat |
35113722 |
T |
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| Q |
268 |
ttacagcaccctataaaata-aacaaaaaggatgagaccat |
307 |
Q |
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| T |
35113723 |
ttacaacaccttataaaatataacaaaaaggatgagaccat |
35113763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 35113443 - 35113477
Alignment:
| Q |
13 |
tgaaggagtaaaaatcaactaaaacacatacaact |
47 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
35113443 |
tgaaggagtaaaaatcaactaaaacacatacaact |
35113477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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