View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1355_1D_low_23 (Length: 328)
Name: NF1355_1D_low_23
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 13652712 - 13652421
Alignment:
| Q |
1 |
acatcgaattatgttctccatgcctggcacgtttcttatgatgcgatccatgtcctcgtctcctataaattaaacaaccaaaacacacgtaaaactcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
13652712 |
acatcgaattatgttctccatgcctggcacgtttcttatgatgcgatccatgtcctcgtctcctataaattaaacagccagaacacacgtaaaactcatt |
13652613 |
T |
|
| Q |
101 |
atttgcataaatatacgaccaaggttttgaattgtggtatgcaatagtagataagtttattaagtnnnnnnnnntagaaaggtgtataaaatatgagtag |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| || |
|
|
| T |
13652612 |
atttgcatcaatatacgaccaaggttttgaattgtggtatgcaatagtagataagtttattaagtaaaaaaa---agataggtgtatgaaataagaggag |
13652516 |
T |
|
| Q |
201 |
cgccaact---aacaatatgttgcgaacactctctcaaatacctactcttttattaaataaaatttatatagatctcatactttaaaaatagatc |
292 |
Q |
| |
|
| | || ||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||| | | |||||||||||| ||||||||| |
|
|
| T |
13652515 |
ccgtagctatgaacaatatgttacgaacactctctcaatcacctactcttttattagataaaacttacgtgggtctcatactttagaaatagatc |
13652421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 13658163 - 13658103
Alignment:
| Q |
17 |
tccatgcctggcacgtttcttatgatgcgatccatgtcctcgtctcctataaattaaacaa |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13658163 |
tccatgcctggcacgtttcttatgatgcgatccatgtcctcatctcctataaattaaacaa |
13658103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 13647644 - 13647576
Alignment:
| Q |
5 |
cgaattatgttctccatgcctggcacgtttcttatgatgcgatccatgtcctcgtctcctataaattaa |
73 |
Q |
| |
|
|||| |||||| ||||||||||| | |||| ||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
13647644 |
cgaagtatgttttccatgcctggaatgtttgttatgattcgatccatgtcttcgtctcctaaaaattaa |
13647576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University