View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_24 (Length: 321)
Name: NF1355_1D_low_24
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 38751369 - 38751068
Alignment:
| Q |
1 |
gaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaacagctcttctgtgaagctctttggtgttcctctttgtggaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751369 |
gaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaatagctcttctgtgaagctctttggtgttcctctttgtggaaaa |
38751270 |
T |
|
| Q |
101 |
aagagggttcatcctagtaatcttgattaataagaataattagttttatgttcagagctttccatgataatgttaaagtctgtaatggattgctttgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751269 |
aagagggttcatcctagtaatcttgattaataagaataattagttttatgttcagagctttccatgataatgttaaagtctgtaatggattgctttgatt |
38751170 |
T |
|
| Q |
201 |
gttttttgttggcatttgaagataaccatcttttcatgtatagctgaggctgatatttagattttgacttagttatttctttcagattttccattacttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38751169 |
gttttttgttggcatttgaagataaccatcttttcatgtatagctgaggctgatatttagattttgacttagttatttctttcagattttccattacttg |
38751070 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
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|| |
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| T |
38751069 |
at |
38751068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3021080 - 3021318
Alignment:
| Q |
1 |
gaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaacagctcttctgtgaagctctttggtgttcctctttgtggaaaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
3021080 |
gaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaatagctcttctgttaagctttttggtgttcctctttgtggaaaa |
3021179 |
T |
|
| Q |
101 |
aagagggttcatcctagtaatcttgattaataagaataattagttttatgttcagagctttccatgataatgttaaagtctgtaatggattgctttgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3021180 |
aagagggttcatcctagtaatcttgattaataagaataattagttttatgttcagagctttccatgataatgttaaagtctgtaatggatttctttgatt |
3021279 |
T |
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| Q |
201 |
gttttttgttggcatttgaagataaccatcttttcatgt |
239 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
3021280 |
gttttttgttggcatttgaagagaaccatcttttcatgt |
3021318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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