View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1355_1D_low_25 (Length: 316)
Name: NF1355_1D_low_25
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 17860113 - 17860419
Alignment:
| Q |
3 |
aatgagatgg-acatcagctaggatcacattcacgctaacataactagactcggatggagttgcagatggatgaccagaattatgatgttggtcataggc |
101 |
Q |
| |
|
|||||||||| || |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
17860113 |
aatgagatgggacttcagctgggatcacattctcgctaacataactagactcggatggacttgcagatggatgaccagaattatgttgctggtcataggc |
17860212 |
T |
|
| Q |
102 |
atccttgtaccaattgaacagtttgaacagctgagtatggatcacaacaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17860213 |
atccttgtaccaattgaacagtttgaacagctgagtatggatcacagcaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcac |
17860312 |
T |
|
| Q |
202 |
cactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17860313 |
cactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttct |
17860412 |
T |
|
| Q |
302 |
gcttcat |
308 |
Q |
| |
|
||||||| |
|
|
| T |
17860413 |
gcttcat |
17860419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 308
Target Start/End: Complemental strand, 34915699 - 34915393
Alignment:
| Q |
3 |
aatgagatgg-acatcagctaggatcacattcacgctaacataactagactcggatggagttgcagatggatgaccagaattatgatgttggtcataggc |
101 |
Q |
| |
|
|||||||||| || |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
34915699 |
aatgagatgggacttcagctgggatcacattctcgctaacataactagactcggatggacttgcagatggatgaccagaattatgttgctggtcataggc |
34915600 |
T |
|
| Q |
102 |
atccttgtaccaattgaacagtttgaacagctgagtatggatcacaacaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34915599 |
atccttgtaccaattgaacagtttgaacagctgagtatggatcatagcaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcac |
34915500 |
T |
|
| Q |
202 |
cactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34915499 |
cactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttct |
34915400 |
T |
|
| Q |
302 |
gcttcat |
308 |
Q |
| |
|
||||||| |
|
|
| T |
34915399 |
gcttcat |
34915393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 4968644 - 4968950
Alignment:
| Q |
3 |
aatgagatgg-acatcagctaggatcacattcacgctaacataactagactcggatggagttgcagatggatgaccagaattatgatgttggtcataggc |
101 |
Q |
| |
|
|||||||||| || |||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
4968644 |
aatgagatgggacttcagctgggatcacattctcgctaacataactagactcggatggacttgcagacggatgaccagaattatgttgctggtcataggc |
4968743 |
T |
|
| Q |
102 |
atccttgtaccaattgaacagtttgaacagctgagtatggatcacaacaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcac |
201 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968744 |
atccttgtaccaattgaacagtttgaatagctgagtatggatcacagcaatcagatcagtaaaaaatgtaggttggtcaccatacatgtcattgaagcac |
4968843 |
T |
|
| Q |
202 |
cactccacatagctaaacttgtatcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttct |
301 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968844 |
cactccacataactaaacttgtatcgagggtcaagaatcacaccaaagtaaataagcttgttgatgttttcaattttaccccaatacttgttgtatttct |
4968943 |
T |
|
| Q |
302 |
gcttcat |
308 |
Q |
| |
|
||||||| |
|
|
| T |
4968944 |
gcttcat |
4968950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University