View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_26 (Length: 312)
Name: NF1355_1D_low_26
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 29708681 - 29708388
Alignment:
| Q |
1 |
tttgtgttttcttgctaagtttgttggtttcattcgatgcagtgagagcttgatcactttcactgccttctttggagattcatttttcattcctttcatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
29708681 |
tttgtgttttcttgctaagtttgttggtttcattcgatggagtgagagcttgatcactttcacagccttctttggagattcattgttcattcctttcatg |
29708582 |
T |
|
| Q |
101 |
aattcacttacctgtatgagcaaaatacattcaattcctttatgaacccgttaacactagtgaagcgtattcagctaatcaattcaagagaagctgcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29708581 |
aattcacttacctgtatgagcaaaatacattcaattcctttatgaacccgttaacactagtgaagcgtattcagctaatcaattcaagagaagctgcact |
29708482 |
T |
|
| Q |
201 |
taacattagcgaagatgcttcgtggcacactaaatacaaagattctgcttatgttttcgttggtggtattccctttgatttcactgagggtgat |
294 |
Q |
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| T |
29708481 |
taacatcagcgaagatgcttcgtggcacactaaatacaaagattctgcttatgttttcgttggtggtattccctttgatttcactgagggtgat |
29708388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 29707029 - 29706875
Alignment:
| Q |
142 |
atgaacccgttaacactagtgaagcgtattcagctaatcaattcaagagaagctgcacttaacattagcgaagatgcttcgtggcacactaaatacaaag |
241 |
Q |
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||||||||| |||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
29707029 |
atgaacccgctaacactagtgaagcgcattcaacaaatcaattctagagaagctgcacttaacataagcgaagatgcttcgtggcacacaaaatacaaag |
29706930 |
T |
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| Q |
242 |
attctgcttatgttttcgttggtggtattccctttgatttcactgagggtgatgt |
296 |
Q |
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| T |
29706929 |
attctgcttatgttttcgtcggtggtattccctttgatttcactgagggtgatgt |
29706875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 32312146 - 32312266
Alignment:
| Q |
17 |
aagtttgttggtttcattcgatgcagtgagagcttgatcactttcactgccttctttggagattcatttttcattcctttcatgaattcacttacctgta |
116 |
Q |
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|||||||||| ||||||| |||| | || |||||| || ||||||||||||||||| || ||||||| |||| |||| ||| || || |||| ||||| |
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| T |
32312146 |
aagtttgttgatttcatttgatggaatgggagctttttcgctttcactgccttctttcgacattcattgttcagtcctgtcacgatctcccttatctgta |
32312245 |
T |
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| Q |
117 |
tgagcaaaatacattcaattc |
137 |
Q |
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||| |||||| |||||||||| |
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| T |
32312246 |
tgaccaaaatgcattcaattc |
32312266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 17979653 - 17979732
Alignment:
| Q |
58 |
tttcactgccttctttggagattcatttttcattcctttcatgaattcacttacctgtatgagcaaaatacattcaattc |
137 |
Q |
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|||||||||||||||||||||||| || ||||| | | | |||| ||| ||||||||||| | |||||||||||| |||| |
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| T |
17979653 |
tttcactgccttctttggagattccttgttcatgcgtgtgatgatttcccttacctgtataaccaaaatacattccattc |
17979732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 29850140 - 29850229
Alignment:
| Q |
54 |
tcactttcactgccttctttggagattcatttttcattcctttcatgaattcacttacctgtatgagcaaaatacattcaattcctttat |
143 |
Q |
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| T |
29850140 |
tcactttcactgtcttctttggagactcattttttaggcctgtcattattttccttacctgtatgacaaaaatccattcatttgctttat |
29850229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 41489306 - 41489224
Alignment:
| Q |
57 |
ctttcactgccttctttggagattcatttttcattcctttcatgaattcacttacctgtatgagcaaaatacattcaattcct |
139 |
Q |
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||||||||||||||||| || ||||||| || | |||| |||||| ||| ||||| ||| ||| ||| ||||||||||||||| |
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| T |
41489306 |
ctttcactgccttctttagatattcattgtttagtcctgtcatgatttcccttacatgtgtgaccaagatacattcaattcct |
41489224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 7585815 - 7585731
Alignment:
| Q |
60 |
tcactgccttctttggagattcatttttcattcctttcatgaattcacttacctgtatgagc-aaaatacattcaattcctttat |
143 |
Q |
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||||||||||||||||||||||||| ||||| | | ||| | ||| ||||||||||| | | |||||||||||| |||| |||| |
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| T |
7585815 |
tcactgccttctttggagattcattgttcatgcttgtcacaatttcccttacctgtataaccaaaaatacattcatttccattat |
7585731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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