View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_28 (Length: 311)
Name: NF1355_1D_low_28
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_28 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 64 - 303
Target Start/End: Original strand, 6997 - 7236
Alignment:
| Q |
64 |
taagtttaatacgtttattgtatactagtcaatacacatggtcatgcagtgcaacgaattttctttcgtaagaaccatcattttccattatggaaacctg |
163 |
Q |
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| T |
6997 |
taagtttaatacgtttattgtatactagtcaatacacatggtcatgcagtgcaacgaattttctttcgtaagaaccatcattttccattatgaaaacctg |
7096 |
T |
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| Q |
164 |
cgcaaagagttgataacaaaattgctacgttatttctttgtgtggataatatataacctacgtttcgcgcttccattctttcaattctattaataatcct |
263 |
Q |
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| T |
7097 |
cgcaaagagttgataacaaaattgctacgttatttctttgtgtggataatatataacctacgtttcgcgcttccattctttcaattctattaataatcct |
7196 |
T |
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| Q |
264 |
cctacaacagtaattgtaaggtgaatatttttagaataat |
303 |
Q |
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| T |
7197 |
cctacaacagtaattgtaaggtgaatatttttagaataat |
7236 |
T |
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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 181 - 301
Target Start/End: Original strand, 34116596 - 34116715
Alignment:
| Q |
181 |
aaaattgctacgttatttctttgtgtggataa-tatata-acctacgtttcgcgcttccattctttcaattctattaataatcctcctacaacagtaatt |
278 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||||| ||||| |
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| T |
34116596 |
aaaattgctacgttatttctttgtgtggataaatatatatacctatgtttcgcgcttccattctttcaattcta---ataatcttcctacaacaataatt |
34116692 |
T |
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| Q |
279 |
gtaaggtgaatatttttagaata |
301 |
Q |
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| T |
34116693 |
gtaaggtgaatattttgagaata |
34116715 |
T |
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