View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_30 (Length: 301)
Name: NF1355_1D_low_30
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 4643719 - 4644009
Alignment:
| Q |
10 |
agatgaagaggagtatgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcga |
109 |
Q |
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| T |
4643719 |
agatgaagaggagtatgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcga |
4643818 |
T |
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| Q |
110 |
gtgctgtatccttttactaatatcatctatgcagattatttcaatgctgcattgcagttgtacaaatccccagaacaatatggtagtctgcttgctaatc |
209 |
Q |
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| T |
4643819 |
gtgctgtatccttttactaatatcatctatgcagattatttcaatgctgcattgcagttgtacaaatctccagaacaatatggtagtctgcttgctaatc |
4643918 |
T |
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| Q |
210 |
ct-tttactttttatgtcatatcaatgtatttgtgctgcaagtaagcattacaagttgcaacataaaagttcagtcatatagaactgttca |
299 |
Q |
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| T |
4643919 |
ctctttactttttatgtcatatcaatgtgtttgtgctgcaagtaagcattacaagttgcaacataaaagttcagtcatatagaactgttca |
4644009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 4661604 - 4661784
Alignment:
| Q |
10 |
agatgaagaggagtatgatcaagctggatgtttgaaatggttaaacaagttttttgaataccataatgagctgcttcaaaccgaactacataagcttcga |
109 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||| |
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| T |
4661604 |
agatgaagatgagtatgatcaagctggatgtttgacatggttaaacaagttttttgaatatcataatgagctgcttcaaatcgaactaaataggcttcga |
4661703 |
T |
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| Q |
110 |
gtgctgtatccttttactaatatcatctatgcagat--tatttca--atgctgcattgcagttgtacaaatccccagaaca |
186 |
Q |
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| T |
4661704 |
gtcttgtatcattttgctaatatcatctatgcagattatatttcaatatgctgcattgcagtgttacaaatctccagaaca |
4661784 |
T |
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