View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355_1D_low_31 (Length: 300)

Name: NF1355_1D_low_31
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355_1D_low_31
NF1355_1D_low_31
[»] chr4 (28 HSPs)
chr4 (5-280)||(5887941-5888217)
chr4 (5-277)||(5562969-5563251)
chr4 (5-280)||(5896792-5897080)
chr4 (113-280)||(5611902-5612070)
chr4 (130-280)||(5557318-5557469)
chr4 (12-270)||(5551423-5551694)
chr4 (139-250)||(5849748-5849860)
chr4 (117-280)||(3747287-3747451)
chr4 (117-280)||(5572876-5573040)
chr4 (117-280)||(5585083-5585247)
chr4 (5-270)||(5854704-5854982)
chr4 (5-97)||(5891136-5891228)
chr4 (174-280)||(5856499-5856605)
chr4 (16-77)||(5603678-5603739)
chr4 (16-73)||(5423081-5423138)
chr4 (12-72)||(5611792-5611852)
chr4 (17-76)||(5856326-5856385)
chr4 (24-101)||(5557203-5557280)
chr4 (16-76)||(253680-253740)
chr4 (111-278)||(5603782-5603950)
chr4 (132-179)||(5891041-5891089)
chr4 (16-95)||(5849916-5849995)
chr4 (234-280)||(5891001-5891047)
chr4 (16-73)||(5345764-5345821)
chr4 (28-73)||(5357357-5357402)
chr4 (16-73)||(5363717-5363774)
chr4 (16-72)||(5379580-5379636)
chr4 (16-73)||(5355243-5355300)
[»] chr8 (1 HSPs)
chr8 (12-279)||(1481416-1481693)
[»] chr5 (1 HSPs)
chr5 (16-73)||(20329764-20329821)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 5888217 - 5887941
Alignment:
Q  5 gaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctcacatgctggttgtggttg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5888217 gaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctcacatgctggttgtgggtg 5888118  T
Q  105 cggcccatcatttggtgtttcagttaatggaggtccatatagtccatcattacc-tcaaacgaagatgcttcaaatgactgaagttgggtacttgttggg 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  5888117 cggcccatcatttggtgtttcagttaatggaggtccatataggccatcattaccttcaaacgaagatgcttcaaatgactgaagttgggtacctgttggg 5888018  T
Q  204 atcttcccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5888017 atcttcccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttc 5887941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 5 - 277
Target Start/End: Original strand, 5562969 - 5563251
Alignment:
Q  5 gaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctcacatgctggttgtggttg 104  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||    
T  5562969 gaccaacgatgattccgagcccaaaaacaaatcccaattccacacttaaaaaattccagtcaattgaacaagcgaatctctcacatgctggttgtgggtg 5563068  T
Q  105 cggc---------ccatcatttggtgtttcagttaatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggta 194  Q
    ||||         |||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||| ||||||||||||    
T  5563069 cggcttatctggcccatcatttggtgtttcagttaatggaggtccatatagcccatcatttccttcaaaggaagatgcttcaaatgattgaagttgggta 5563168  T
Q  195 cttgttgggatcttcccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaat 277  Q
    | ||||||||||||||| |||||||||||||  |||||||||||  || |||||||||||| ||||||||  |||| ||||||    
T  5563169 cctgttgggatcttccccaccaaatgattgatggaaaggttcaagaaagaaaggaatgacaggcttgcaatctgcacaggaat 5563251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 5897080 - 5896792
Alignment:
Q  5 gaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctcacatgctggttgtggttg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  5897080 gaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccgttcaattgaacaagcaaacctctcacatgctggttgtgggtg 5896981  T
Q  105 cggcccatcatt------------tggtgtttcagttaatggaggtccatatagtccatcattacctc-aaacgaagatgcttcaaatgactgaagttgg 191  Q
    | |  |||| |             | ||||| || | |  ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5896980 cagttcatcctgctttttacagtatagtgttgcattcagcggaggaccatatagtccatcattacctctaaacgaagatgcttcaaatgactgaagttgg 5896881  T
Q  192 gtacttgttgggatcttcccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttc 280  Q
    |||| |||||| |||||||| |||||||||||||  || |||||||||||| ||||||||||||  |||||||||||||  ||||||||    
T  5896880 gtacctgttggaatcttccccaccaaatgattgagggataggttcaaataagaaaggaatgacaaacttgcaagttgcaccggaatttc 5896792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 5611902 - 5612070
Alignment:
Q  113 catttggtgtttcagttaatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggtacttgttgggatcttccc 211  Q
    |||||||||||||||| || |||||||||||||| |||| ||| ||| |||| ||||| || | ||||||||||||||| |||| |||||||||||||||    
T  5611902 catttggtgtttcagtcaacggaggtccatatagcccattattcccttcaaatgaagaagcctgaaatgactgaagttgagtacctgttgggatcttccc 5612001  T
Q  212 aaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttc 280  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  5612002 aaccaaatgattgaaggaaagtttcaaataagaaaggaatgacatgcttgcaagttgcagaggaatttc 5612070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 5557318 - 5557469
Alignment:
Q  130 aatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggtacttgttgggatcttcccaaccaaatgattgaacg 228  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |    
T  5557318 aatggaggaccatatagtccatcattaccttcaaatgaagatgcttcaaatgactgaagttgggtacctgttgggatcatcccaactaaatgattgaagg 5557417  T
Q  229 aaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttc 280  Q
    | |||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  5557418 agaggttcaaataagaaaggaatgacatgcttgcaagttgcactggaatttc 5557469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 5551423 - 5551694
Alignment:
Q  12 gatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctcacatgctggttgtggttgcggccca 111  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||| |  || || ||    
T  5551423 gatgattccaagcccaaaaacaaatcccaactccacacttaaaaaattccagtcaattgaacaagctaacctttcacaagctggctgtaggggcagctca 5551522  T
Q  112 tc------------atttggtgtttcagttaatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggtacttg 198  Q
    ||            |||| || ||||||  | | ||||||||||||| || |  || ||| |||| ||||| |||| ||||||||||||||| |||| ||    
T  5551523 tcctgcctgttaccatttagtttttcaggcagtagaggtccatatagccccttgtttccttcaaatgaagacgcttgaaatgactgaagttgagtacctg 5551622  T
Q  199 ttgggatcttcccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgca 270  Q
    | |||||||| ||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||    
T  5551623 tagggatctttccaaccaaatgattgaaggaaaggttcaaataagaaaggaatgataagcttgcaagttgca 5551694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 5849860 - 5849748
Alignment:
Q  139 ccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggtacttgttgggatcttcccaaccaaatgattgaacgaaaggttca 237  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||    
T  5849860 ccatatagtccatcattaccttcaaacgacgatgcttcaaatgactgaagttgggtacctgttgggatcttccccaccaaatgattgaaggataggttca 5849761  T
Q  238 aataacaaaggaa 250  Q
    ||||| |||||||    
T  5849760 aataagaaaggaa 5849748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 117 - 280
Target Start/End: Original strand, 3747287 - 3747451
Alignment:
Q  117 tggtgtttcagttaatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggtacttgttgggatcttcccaacc 215  Q
    |||| ||||||| || ||||| |||||||| |||| ||| ||| | ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  3747287 tggtttttcagtcaacggaggaccatatagaccataatttccttcgaacgaagatgcttcaaatgactgaagttgcgtacctgttggaatcttcccaacc 3747386  T
Q  216 aaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttc 280  Q
    ||||||||||| || |||||||||||  ||||||| |||| ||| ||||||||||  ||||||||    
T  3747387 aaatgattgaaggagaggttcaaatatgaaaggaaggacaagctggcaagttgcatgggaatttc 3747451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 5573040 - 5572876
Alignment:
Q  117 tggtgtttcagttaatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggtacttgttgggatcttcccaacc 215  Q
    |||| ||||||| ||||||||||||||||| |||||||| ||| |||| ||||| |  | ||||||||||||||| |||| ||||||||||||||| |||    
T  5573040 tggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaatgactgaagttgagtacctgttgggatcttccccacc 5572941  T
Q  216 aaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttc 280  Q
    ||||||||||| ||||||||||||||  ||||||| |||| |||| | || |||| |||||||||    
T  5572940 aaatgattgaaggaaaggttcaaatatgaaaggaaggacaagctttctagctgcacaggaatttc 5572876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 5585247 - 5585083
Alignment:
Q  117 tggtgtttcagttaatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggtacttgttgggatcttcccaacc 215  Q
    |||| ||||||| ||||||||||||||||| |||||||| ||| |||| ||||| |  | ||||||||||||||| |||| ||||||||||||||| |||    
T  5585247 tggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagaagactgaaatgactgaagttgagtacctgttgggatcttccccacc 5585148  T
Q  216 aaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttc 280  Q
    ||||||||||| ||||||||||||||  ||||||| |||| |||| | || |||| |||||||||    
T  5585147 aaatgattgaaggaaaggttcaaatatgaaaggaaggacaagctttctagctgcacaggaatttc 5585083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 5854982 - 5854704
Alignment:
Q  5 gaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctcacatgctggttgtggttg 104  Q
    |||||| ||||||||| || ||||||| ||||||||| |||| ||| ||||||||||| |||||||||||||| ||||| ||||| ||||||| | |  |    
T  5854982 gaccaatgatgattccgagcccaaaaacaaatcccaactccatactcaaaaaattccagtcaattgaacaagctaacctttcacaggctggttcttgggg 5854883  T
Q  105 cggcccatc------------atttggtgtttcagttaatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgg 191  Q
    | || ||||            ||||||| ||||||  | ||||||||||||||| ||||  || ||| |||||||||  |||| |||||||||||||||     
T  5854882 cagctcatcctgccttttaccatttggtttttcaggcagtggaggtccatatagcccattgtttccttcaaacgaagtcgcttgaaatgactgaagttga 5854783  T
Q  192 gtacttgttgggatcttcccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgca 270  Q
    || | ||| |||||||| |||||||||| |||||| ||||||||||||||| | |||||  ||| |||||| |||||||    
T  5854782 gttcctgtcgggatctttccaaccaaataattgaaggaaaggttcaaataagagaggaacaacaagcttgccagttgca 5854704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 5891228 - 5891136
Alignment:
Q  5 gaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctcacatgctggtt 97  Q
    |||||| ||||||||| |  ||||||| ||||||||| |||||||||||||||||||| |||||||||||| | ||||| ||| |||||||||    
T  5891228 gaccaatgatgattccgaacccaaaaacaaatcccaactccacacttaaaaaattccaatcaattgaacaacctaacctttcatatgctggtt 5891136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 5856499 - 5856605
Alignment:
Q  174 tcaaatgactgaagttgggtacttgttgggatcttcccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagag 273  Q
    ||||||||||||||||| || | |||||| ||||||||  | ||||||||||| || |||||||| ||| ||||||||||||  |||||||||||||  |    
T  5856499 tcaaatgactgaagttgagtgcctgttggaatcttccccgcgaaatgattgaatgagaggttcaagtaagaaaggaatgacagacttgcaagttgcatgg 5856598  T
Q  274 gaatttc 280  Q
    |||||||    
T  5856599 gaatttc 5856605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 5603678 - 5603739
Alignment:
Q  16 attccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagc 77  Q
    |||||||| |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||    
T  5603678 attccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagc 5603739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 5423081 - 5423138
Alignment:
Q  16 attccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaac 73  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  5423081 attccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 5423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 5611792 - 5611852
Alignment:
Q  12 gatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaa 72  Q
    ||||||||| || ||||||| ||||||||| |||||||||||||||||||| |||||||||    
T  5611792 gatgattccgagcccaaaaacaaatcccaactccacacttaaaaaattccagtcaattgaa 5611852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 5856326 - 5856385
Alignment:
Q  17 ttccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaag 76  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||| |||||| ||||||    
T  5856326 ttccaagcccaaaaataaatcctagttccacacttaaaaaattccaatcaattaaacaag 5856385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 5557203 - 5557280
Alignment:
Q  24 tccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctcacatgctggttgtgg 101  Q
    |||||| | |||||||| ||| ||||||| ||||||||| ||||||||||||| || |||  ||||||||||||||||    
T  5557203 tccaaacacaaatcccagttctacacttataaaattccagtcaattgaacaagtaagccttccacatgctggttgtgg 5557280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 253740 - 253680
Alignment:
Q  16 attccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaag 76  Q
    |||||||| ||||||| |||||| | ||||| ||||||||||||||| |||||||||||||    
T  253740 attccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaag 253680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 278
Target Start/End: Original strand, 5603782 - 5603950
Alignment:
Q  111 atcatttggtgtttcagttaatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggtacttgttgggatcttc 209  Q
    |||||||||| ||| |||  | ||||| |||||||| ||||| || ||| |||| || ||| |||| |||||||||| |||||| | ||||| |||||||    
T  5603782 atcatttggttttttagtccaaggaggaccatatagcccatcgtttccttcaaatgatgattcttcgaatgactgaatttgggtgcctgttgagatcttc 5603881  T
Q  210 ccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatt 278  Q
     |  ||||| ||||| | || ||||||||  || |||||||||||| ||||||||  |||| |||||||    
T  5603882 accgccaaacgattggaggagaggttcaaggaagaaaggaatgacaggcttgcaatctgcacaggaatt 5603950  T

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Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 5891089 - 5891041
Alignment:
Q  132 tggaggtccatatagtccatcattacc-tcaaacgaagatgcttcaaat 179  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  5891089 tggaggaccatatagtccatcattaccttcaaacgaagatgcttcaaat 5891041  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 5849995 - 5849916
Alignment:
Q  16 attccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctcacatgctgg 95  Q
    ||||| || ||||||| ||||||||| |||||||||||||||||||| ||||| |||||| | ||| | ||||||| |||    
T  5849995 attccgagcccaaaaacaaatcccaactccacacttaaaaaattccagtcaatcgaacaatctaacttttcacatgttgg 5849916  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 5891047 - 5891001
Alignment:
Q  234 ttcaaataacaaaggaatgacatgcttgcaagttgcagaggaatttc 280  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||||    
T  5891047 ttcaaataagaaaggaatgacatgcttgcaagctgcacaggaatttc 5891001  T

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Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 5345764 - 5345821
Alignment:
Q  16 attccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaac 73  Q
    |||||||  ||||||||||||||||| ||||||||||| || ||||| ||||||||||    
T  5345764 attccaaagccaaaaataaatcccaactccacacttaagaagttccaatcaattgaac 5345821  T

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Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 5357402 - 5357357
Alignment:
Q  28 aaaataaatcccaattccacacttaaaaaattccattcaattgaac 73  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||||    
T  5357402 aaaataaatcccaactccacacttaagaaattccaatcaattgaac 5357357  T

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Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 5363774 - 5363717
Alignment:
Q  16 attccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaac 73  Q
    |||||||  ||||||||||||||||| ||||||||||| ||| |||| ||||||||||    
T  5363774 attccaaacccaaaaataaatcccaactccacacttaagaaactccagtcaattgaac 5363717  T

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Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 5379636 - 5379580
Alignment:
Q  16 attccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaa 72  Q
    |||||||  ||||||||||||||||| ||||||||||| | |||||| |||||||||    
T  5379636 attccaaagccaaaaataaatcccaactccacacttaagagattccaatcaattgaa 5379580  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 5355300 - 5355243
Alignment:
Q  16 attccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaac 73  Q
    |||||||  ||||||||||||||||| |||| |||||| |||||||| || |||||||    
T  5355300 attccaaagccaaaaataaatcccaactccaaacttaagaaattccaatcgattgaac 5355243  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 1481416 - 1481693
Alignment:
Q  12 gatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaacaagcaaacctctc-acatgctggttgtgg--------- 101  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| ||||||||| |||| ||||||||| | || ||| ||||| |||||||||             
T  1481416 gatgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagcc-ctctacatgttggttgtggatccaagtc 1481514  T
Q  102 ttgcggcccatcatttggtgtttcagttaatggaggtccatatagtccatcattacct-caaacgaagatgcttcaaatgactgaagttgggtacttgtt 200  Q
    ||||  |  | ||| |||| ||||||| ||||||||||||||||| |||||||| ||| |||| ||||| ||   ||||||||||||||| |||| ||||    
T  1481515 ttgcctcttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaatgaagaagccggaaatgactgaagttgagtacctgtt 1481614  T
Q  201 gggatcttcccaaccaaatgattgaacgaaaggttcaaataacaaaggaatgacatgcttgcaagttgcagaggaattt 279  Q
    || ||| |||| |||||||||||||| || |||||||||||| |||| |||||||||| | |||  |||| ||||||||    
T  1481615 ggaatcatccctaccaaatgattgaaagagaggttcaaataagaaagaaatgacatgcatacaatctgcacaggaattt 1481693  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 20329821 - 20329764
Alignment:
Q  16 attccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaac 73  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  20329821 attccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac 20329764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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