View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_35 (Length: 292)
Name: NF1355_1D_low_35
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 34300382 - 34300499
Alignment:
| Q |
168 |
aatttatgattcatgctatgtgcctatgctagttgatcttctagtcaatgagattaatacactgccggtgttaaaaaattacgccaccaacaaattacac |
267 |
Q |
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| T |
34300382 |
aatttatgattcatgctatgtgcctatgctagttgctcttctagtcaatgagattaatacactgtcggtgttaaaaaattacgccgccaacaaattacac |
34300481 |
T |
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| Q |
268 |
tgaaccatatatgtgact |
285 |
Q |
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| T |
34300482 |
tgaaccatatatgtgact |
34300499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 34300218 - 34300306
Alignment:
| Q |
7 |
ttggtgttaggcaatggcccaagtaaaaaccacatttcttcattatcttgttactttttaccttatcaggtttattattctaatgaaac |
95 |
Q |
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| T |
34300218 |
ttggtgttagacaatggcccaagtaaaaaccacatttcttcattatcttgttactttttaccttatcaggtttattattctaatgaaac |
34300306 |
T |
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