View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_37 (Length: 285)
Name: NF1355_1D_low_37
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 17860449 - 17860734
Alignment:
| Q |
1 |
tcaggttcatggctgatcttttcaactcacaatgaacagaagctagttggtggaatgccttgtgcaaagacacttcctgatatgaggaaaactcctt--- |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17860449 |
tcaggttcatggctgatcttttcaactcacaatgaacagaagctagttggtggaatgccttgtgcaaagacacttcctgagatgaggaaaactccttggt |
17860548 |
T |
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| Q |
98 |
-------------------agaaacctgacaaaacacctaacattctcctagtcatgaatactaggaggaccagcttccccaaaaaactccaaataccca |
178 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17860549 |
agcatcatagaaaatttttagaaacctgacaaaacacctaacattctcccagtcatgaatactaggaggaccagcttccccaaaaaactccaaataccca |
17860648 |
T |
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| Q |
179 |
gaatcttcaccctccaacttctcaaaggctggttggaatttctcagcaccctctagcattatatacgctgtgttccaccttgtttg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
17860649 |
gaatcttcaccctccaacttctcaaaggctggttggaatttctcagcaccatctagcattaaatacgctgtgttccaccttgtttg |
17860734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 4968980 - 4969265
Alignment:
| Q |
1 |
tcaggttcatggctgatcttttcaactcacaatgaacagaagctagttggtggaatgccttgtgcaaagacacttcctgatatgaggaaaactcctt--- |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4968980 |
tcaggttcatggctgatcttttcaactcacaatgaacagaagctagttggtggaatgccttgtgcaaagacacttcctgagatgaggaaaactccttggt |
4969079 |
T |
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| Q |
98 |
-------------------agaaacctgacaaaacacctaacattctcctagtcatgaatactaggaggaccagcttccccaaaaaactccaaataccca |
178 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4969080 |
agcatcatagaaaatttttagaaacctgacaaaacacctaacattctcccagtcatgaatactaggaggaccagcttccccaaaaaactccaaataccca |
4969179 |
T |
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| Q |
179 |
gaatcttcaccctccaacttctcaaaggctggttggaatttctcagcaccctctagcattatatacgctgtgttccaccttgtttg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
4969180 |
gaatcttcaccctccaacttctcaaaggctggttggaatttctcagcaccatctagcattaaatacgctgtgttccaccttgtttg |
4969265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 34915363 - 34915078
Alignment:
| Q |
1 |
tcaggttcatggctgatcttttcaactcacaatgaacagaagctagttggtggaatgccttgtgcaaagacacttcctgatatgaggaaaactcctt--- |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
34915363 |
tcaggttcatggctgatcttttcaactcacaatgaacagaagctagttggtggaatgccttgtgcaaagacactccctgagatgaggaaaactccttggt |
34915264 |
T |
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| Q |
98 |
-------------------agaaacctgacaaaacacctaacattctcctagtcatgaatactaggaggaccagcttccccaaaaaactccaaataccca |
178 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34915263 |
agcatcatagaaaatttttagaaacctgacaaaacacctaacattctcccagtcatgaatactaggaggaccagcttccccaaaaaactccaaataccca |
34915164 |
T |
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| Q |
179 |
gaatcttcaccctccaacttctcaaaggctggttggaatttctcagcaccctctagcattatatacgctgtgttccaccttgtttg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
34915163 |
gaatcttcaccctccaacttctcaaaggctggttggaatttctcagcaccatctagcattaaatacgctgtgttccaccttgtttg |
34915078 |
T |
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