View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_40 (Length: 270)
Name: NF1355_1D_low_40
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_40 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 18542695 - 18542430
Alignment:
| Q |
5 |
attatacttgggtcttgaaagtcactttttgctttctaaaaatttaatggtatttcttatccatttagatttgataatataagtgctacaatccaaggac |
104 |
Q |
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| T |
18542695 |
attatgcttgggtcttgaaagtcactttttgctttctaaaaatttaatggtatttcttatccatttagatttgataatataagtggtacaatccaaggac |
18542596 |
T |
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| Q |
105 |
aatggtaaaagaaactaatttaaataatgatgttcatcatattatagattagacaaggaataaaagagagtttatggttttattttacatacttaatgga |
204 |
Q |
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| T |
18542595 |
aatggtaaaagaaactaatttagataatgatgttcatcatattatagactagacaaggaataaaagagagtttatggttttattttacatacttaataga |
18542496 |
T |
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| Q |
205 |
aaggaatagacacattcattcatctggatttcatgaaggcccttgattccgttcacttttgctact |
270 |
Q |
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| T |
18542495 |
aaggaatagacacattcattcatctggatttcatgaaggcccttgatttcgttcacttttgctact |
18542430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 18555995 - 18555865
Alignment:
| Q |
61 |
ttatccatttagatttgataatataagtgctacaatccaaggacaatggtaaaagaaactaatttaaataatgatgttcatcatattatagattagacaa |
160 |
Q |
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| T |
18555995 |
ttatccatttagctttgataatataagtggtacaatccaaggacaatggtgaaagaaactaatttagataaagatgttcatcatattatagactagacaa |
18555896 |
T |
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| Q |
161 |
ggaataaaagagagtttatggttttatttta |
191 |
Q |
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| T |
18555895 |
ggaataaaaaagagtttatggttttatttta |
18555865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 18555575 - 18555488
Alignment:
| Q |
183 |
tttattttacatacttaatggaaaggaatagacacattcattcatctggatttcatgaaggcccttgattccgttcacttttgctact |
270 |
Q |
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| T |
18555575 |
tttattttacatacttaatggaaaggaatagacacgttcattcatctggatttcatgaaggcccttgattcccttcacttttgctact |
18555488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 18550609 - 18550510
Alignment:
| Q |
171 |
agagtttatggttttattttacatacttaatggaaaggaatagacacattcattcatctggatttcatgaaggcccttgattccgttcacttttgctact |
270 |
Q |
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| T |
18550609 |
agagtttatggttttattttacatgctttatgggaatgaatagacacattcattcatctggatttcatggaggctcttgattcccttcacttttgctact |
18550510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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