View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1355_1D_low_42 (Length: 268)
Name: NF1355_1D_low_42
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_42 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 2572929 - 2573157
Alignment:
| Q |
20 |
tcacatttgataaactagttccgaaagccctgtctcataaagaaaaatatatagttaatnnnnnnncaggcacaattaaagcacatggttttaaatagcg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
2572929 |
tcacatttgataaactagttccgaaagccctgtctcataaataaaaatatatagttaataaaaaaagaggcacaatttaagcacatggttttaaatagcg |
2573028 |
T |
|
| Q |
120 |
atcacgtcatgatccttgatactgttgagaatcatagtcagatacgaccaacgaggtcatggagacttaaaaaccatgatggcaaggccacaattgtgat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2573029 |
atcacgtcatgatccttgatactgttgagaatcatagtcagatacgaccaacgaggtcatggagacttaaaaaccatgatggcaaggccacaattgtgat |
2573128 |
T |
|
| Q |
220 |
cggtacgtacatcgggtttagattgtgtg |
248 |
Q |
| |
|
||||| |||||| |||||||||||||||| |
|
|
| T |
2573129 |
cggtatgtacattgggtttagattgtgtg |
2573157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 2600495 - 2600699
Alignment:
| Q |
20 |
tcacatttgataaactagttccgaaagccctgtctcataaagaaaaatatatagttaatnnnnnnncaggcacaattaaagcacatggttttaaatagcg |
119 |
Q |
| |
|
||||||||||||||| || |||||||||||| |||||||| | ||||||| || ||||| || ||| | | ||||||| ||| | |||| || |
|
|
| T |
2600495 |
tcacatttgataaaccagctccgaaagccctatctcataagggaaaatatttaattaataaaaaatgagccaccacttaagcacaaggtat-aaatcacg |
2600593 |
T |
|
| Q |
120 |
atcacgtcatgatccttgatactgttgagaatcatagtcagatacgaccaacgaggtcatggagacttaaaaaccatgatggcaaggccacaattgtgat |
219 |
Q |
| |
|
||||||||| || |||||||| |||||||||||| ||||| |||| || | ||||||| ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
2600594 |
atcacgtcaagaaccttgatattgttgagaatcacagtcaaatacaactgatgaggtcaaagagacataaaaaccaagatggcaaggccacaattgtgat |
2600693 |
T |
|
| Q |
220 |
cggtac |
225 |
Q |
| |
|
||||| |
|
|
| T |
2600694 |
tggtac |
2600699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 2619570 - 2619518
Alignment:
| Q |
98 |
aagcacatggttttaaatagcgatcacgtcatgatccttgatactgttgagaat |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||||||||| |||||||| |
|
|
| T |
2619570 |
aagcacatggttttaaattgcgatcacgtaagtatccttgatact-ttgagaat |
2619518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University