View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1355_1D_low_43 (Length: 267)
Name: NF1355_1D_low_43
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_43 |
 | |
|
| [»] scaffold0330 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 39064273 - 39064405
Alignment:
| Q |
23 |
gtgtgaggctgtatgtggagaacgaggagatcaccgcgacggagggtgatgaacggcggtggaggcggcgccgatgacagggaaacacaaccatgatggt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39064273 |
gtgtgaggctgtatgtggagaacgaggagatcaccgcgacggagggtgatgaacggcggtggaggcggcgccgatgacagggaaacacaaacatgatggt |
39064372 |
T |
|
| Q |
123 |
gagaggaagaaggaggaggagtgttgtacgttc |
155 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |
|
|
| T |
39064373 |
gagaggaagaaggaggaggagtgctgcacgttc |
39064405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 34172817 - 34172945
Alignment:
| Q |
23 |
gtgtgaggctgtatgtggagaacgaggagatcaccgcgacggagggtgatgaacggcggtggaggcggcgccgatgacagggaaacacaaccatgatggt |
122 |
Q |
| |
|
||||||||||||||||| |||| | ||||||| |||| |||||||||||||||||||| || |||| ||||||||||||| |||||||||||||||| |
|
|
| T |
34172817 |
gtgtgaggctgtatgtgaagaagggggagatcgccgcagcggagggtgatgaacggcggcgg---cggctccgatgacagggagacacaaccatgatggt |
34172913 |
T |
|
| Q |
123 |
gagaggaagaaggaggaggagtgttgtacgtt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
34172914 |
gagaggaagaaggaggaggagtgttgtacgtt |
34172945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 39064472 - 39064517
Alignment:
| Q |
222 |
ggaaaaggtgtattttatttttcattaaaaaagtgctcttgccaaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39064472 |
ggaaaaggtgtattttatttttcattaaaaaagtgctcatgccaaa |
39064517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 12864 - 12733
Alignment:
| Q |
23 |
gtgtgaggctgtatgtggagaacgaggagatcaccgcgacggagggtgatgaacggcggtggaggcggcgccgatgacagggaaacacaaccatgatggt |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||| ||| | ||||||| || ||||||||||||| |
|
|
| T |
12864 |
gtgtgaggctgtatgtggagaaggaggagatcgctgcagcggagggtgatgaacggcggtggaggcggcaccggtcacagggagacgcaaccatgatggt |
12765 |
T |
|
| Q |
123 |
gagaggaagaaggaggaggagtgttgtacgtt |
154 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| |
|
|
| T |
12764 |
gagaggaaggaggaggaagagtgttgtacgtt |
12733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 12658 - 12619
Alignment:
| Q |
228 |
ggtgtattttatttttcattaaaaaagtgctcttgccaaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12658 |
ggtgtattttatttttcattaaaaaagtgctcatgccaaa |
12619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 31414676 - 31414740
Alignment:
| Q |
77 |
ggcggtggaggcggcgccgatgacagggaaacacaaccatgatggtgagaggaagaaggaggagg |
141 |
Q |
| |
|
|||||||| |||||| |||||||||| || || | ||||||||| ||||||||||| | |||||| |
|
|
| T |
31414676 |
ggcggtggcggcggcaccgatgacagagagacgcgaccatgatgatgagaggaagacgaaggagg |
31414740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University