View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355_1D_low_47 (Length: 258)

Name: NF1355_1D_low_47
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355_1D_low_47
NF1355_1D_low_47
[»] chr5 (1 HSPs)
chr5 (32-113)||(1282615-1282696)
[»] chr1 (2 HSPs)
chr1 (32-113)||(4125019-4125100)
chr1 (30-113)||(49961128-49961211)


Alignment Details
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 1282615 - 1282696
Alignment:
Q  32 tacataaataacaagaaccatagctgaagcttaaagaactgtagaaattcgaaacagtcaaattttggtcatggtaatttcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1282615 tacataaataacaagaaccatagctgaagcttaaagaactgtagaaattcgaaacagtcaaattttggtcatggtaatttcc 1282696  T

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Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 4125100 - 4125019
Alignment:
Q  32 tacataaataacaagaaccatagctgaagcttaaagaactgtagaaattcgaaacagtcaaattttggtcatggtaatttcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4125100 tacataaataacaagaaccatagctgaagcttaaagaactgtagaaattcgaaacagtcaaattttggtcatggtaatttcc 4125019  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 49961128 - 49961211
Alignment:
Q  30 attacataaataacaagaaccatagctgaagcttaaagaactgtagaaattcgaaacagtcaaattttggtcatggtaatttcc 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49961128 attacataaataacaagaaccatagctgaagcttaaagaattgtagaaattcgaaacagtcaaattttggtcatggtaatttcc 49961211  T

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