View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1355_1D_low_48 (Length: 253)
Name: NF1355_1D_low_48
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_48 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 28636661 - 28636841
Alignment:
| Q |
10 |
ttgcatagaatagaaataatttgcttattctactttagtttattgaatcgtatagatgtttggactttcgataatcctcataatgaaggaaacaaacttc |
109 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||||||||| |||||| || | |
|
|
| T |
28636661 |
ttgcattgcatagaaataatttgcttattctactttagtttgtcgaatcatatagatgtttggactttggataatcctcataatgaaagaaacagac--c |
28636758 |
T |
|
| Q |
110 |
tttgtctatataacttgtaaaaggaatgctactctatactaaacaaacttcttagctatagcaccttcctaaacaacacattt |
192 |
Q |
| |
|
||| ||||||||| ||||||||||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
28636759 |
tttttctatataagttgtaaaaggagtgctactctatactaaccaaacttcctagccatagcaccttcctaaacaacacattt |
28636841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 28657238 - 28657306
Alignment:
| Q |
79 |
gataatcctcataatgaaggaaacaaacttctttgtctatataacttgtaaaaggaatgctactctata |
147 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| | ||||| |||||||||||||||| ||||||| |
|
|
| T |
28657238 |
gataatcctcaaaatgaaggaaacaaatttctttctagatatatgttgtaaaaggaatgctgctctata |
28657306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University