View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_49 (Length: 252)
Name: NF1355_1D_low_49
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 24323742 - 24323531
Alignment:
| Q |
23 |
tgtatatgcgggagctttgtgcactggactgccctttagtgtgtgaaattgcttactttattt---gataagagtagatttattttataaagcattaggt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
24323742 |
tgtatatgcgggagctttgtgcactggactgccctttagtgtgtgaaattgcttactttattttttgataagagtagatttattttataaagcattgggt |
24323643 |
T |
|
| Q |
120 |
gtataaacatcatatggtgactatgagatcccaactatgttggcaccccgtagctactaactatcatttgcaacaccctaacaaccatattaaaataaaa |
219 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24323642 |
gtataaacatcgtatggtgactatgagatcccaactatgttggcaccccgtagctactaactatcatttgcaacaccctaacaaccatattaaaataaaa |
24323543 |
T |
|
| Q |
220 |
ttagggaaagtg |
231 |
Q |
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|| ||||||||| |
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| T |
24323542 |
tttgggaaagtg |
24323531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 24360366 - 24360155
Alignment:
| Q |
23 |
tgtatatgcgggagctttgtgcactggactgccctttagtgtgtgaaattgcttactttattt---gataagagtagatttattttataaagcattaggt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
24360366 |
tgtatatgcgggagctttgtgcactggactgccctttagtgtgtgaaattgcttactttattttttgataagagtagatttattttataaagcattgggt |
24360267 |
T |
|
| Q |
120 |
gtataaacatcatatggtgactatgagatcccaactatgttggcaccccgtagctactaactatcatttgcaacaccctaacaaccatattaaaataaaa |
219 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24360266 |
gtataaacatcgtatggtgactatgagatcccaactatgttggcaccccgtagctactaactatcatttgcaacaccctaacaaccatattaaaataaaa |
24360167 |
T |
|
| Q |
220 |
ttagggaaagtg |
231 |
Q |
| |
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|| ||||||||| |
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| T |
24360166 |
tttgggaaagtg |
24360155 |
T |
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Back To:
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