View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_50 (Length: 252)
Name: NF1355_1D_low_50
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_50 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 5888455 - 5888706
Alignment:
| Q |
1 |
agtgtttcattcaaaacagaaatatatatgttaatttataactataaacatcataatcaaactggaaacacaaataggatacaactccaaaatctagata |
100 |
Q |
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| T |
5888455 |
agtgtttcattcaaaacagaaatatataagttaatttataactataaacatcataatcaaactggaaacacaaataggatacaactccaaaatctagata |
5888554 |
T |
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| Q |
101 |
tagccaattccttcattttggtaaaacaattgcttaatttgtttttctgatcgtcaactggataatgacatcatttgacatacacatggatacaccaaat |
200 |
Q |
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| T |
5888555 |
tagccaattacttcattttggtaaaacaattgcttaatttgtttttctgatcgtcaactggataatgacatcatttgacatacacatggatacaccaaat |
5888654 |
T |
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| Q |
201 |
gatatattactatagtgtttttggtcttatttttaaattagttcatgtgatt |
252 |
Q |
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| T |
5888655 |
gatatattactatagtgtttttggtcttatttttaaattagttcatgtgatt |
5888706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 5897318 - 5897420
Alignment:
| Q |
1 |
agtgtttcattcaaaacagaaatatatatgttaatttataactataaacatcataatcaaactggaaacacaaataggatacaactccaaaatctagata |
100 |
Q |
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| T |
5897318 |
agtgtttcattcaaaacagaaatatataagttaatttataactataaacatcataatcaaactggatacacaaagaggatacaactccaaaatcaagata |
5897417 |
T |
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| Q |
101 |
tag |
103 |
Q |
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| T |
5897418 |
tag |
5897420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 5897446 - 5897526
Alignment:
| Q |
104 |
ccaattccttcattttggtaaaacaattgcttaatttgtttttctgatcgtcaactggataatgacatcatttgacataca |
184 |
Q |
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| T |
5897446 |
ccaattacttcattttggtaaaacaattgcttaatttgattttctgattgtcagctagataataaaatcatttgacataca |
5897526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5551132 - 5551059
Alignment:
| Q |
1 |
agtgtttcattcaaaacagaaatatatatgttaatttataactataaacatcataatcaaactggaaacacaaa |
74 |
Q |
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| T |
5551132 |
agtgtttcattcaaaatagaaatataaaagttgatttataacaataaacatcataatcaaaccggaaacacaaa |
5551059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 5550521 - 5550470
Alignment:
| Q |
189 |
gatacaccaaatgatatattactatagtgtttttggtcttatttttaaatta |
240 |
Q |
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| T |
5550521 |
gatacacctaatgatatattactttagtgtttttggtcttattttcaaatta |
5550470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5855280 - 5855345
Alignment:
| Q |
1 |
agtgtttcattcaaaacagaaatatatatgttaatttataac----tataaacatcataatcaaac |
62 |
Q |
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| T |
5855280 |
agtgtttcattcaaaatagaaatatataagttgatttataactatatataaacatcataatcaaac |
5855345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5556850 - 5556775
Alignment:
| Q |
1 |
agtgtttcattc--aaaacagaaatatatatgttaatttataactataaacatcataatcaaactggaaacacaaa |
74 |
Q |
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| T |
5556850 |
agtgtttcattccgaaaaaagatatatataagttgatttataactatacacatcataaataaactagaaacacaaa |
5556775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 5550942 - 5550865
Alignment:
| Q |
114 |
cattttggtaaaacaattgcttaatttgtttttctgatcgtcaactggataatgacatcatttgacatacacatggatac |
193 |
Q |
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| T |
5550942 |
cattttggtaaaacatttgtttaatttgatt--ctgattgtcagctaaatattgacatcatttgacacacacattgatac |
5550865 |
T |
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