View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_52 (Length: 251)
Name: NF1355_1D_low_52
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 9976617 - 9976854
Alignment:
| Q |
13 |
tggacatcacatgttgaagtgatagatacactagctcgtaaatatttgcaatattaataccacaattgatatgatttacatgcataaaatttggcggaaa |
112 |
Q |
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| T |
9976617 |
tggaaatcacatgttgaagtgatagatacactagctcgtaaatatttgcaatattaataccacaattgataggatttacatgcataaaatttggcggaaa |
9976716 |
T |
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| Q |
113 |
aacacaagaaaataaaactacatattgaatgttacaatttaatatcttctaccttaaataattttactatatttgatatggatttgttctttaccacatt |
212 |
Q |
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| T |
9976717 |
aacacaagaaaataaaactacatattgaatgttaaaatttaatatcttctaccttaaataattttactatatttgatatggatttgttctttaccacatt |
9976816 |
T |
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| Q |
213 |
gcgccttcttgttttctattctctaactcaatttcaac |
250 |
Q |
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| T |
9976817 |
gcaccttcttgttttctattctctagctcaatttcaac |
9976854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 9976556 - 9976597
Alignment:
| Q |
13 |
tggacatcacatgttgaagtgatagatacactagctcgtaaa |
54 |
Q |
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| T |
9976556 |
tggaaatcacatgttgaagtgatagatacactagctcgtaaa |
9976597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 7112313 - 7112087
Alignment:
| Q |
18 |
atcacatgttgaagtgatagata-cactagctcgtaaatatttgcaatattaataccacaattgatatgatttacatgcataaaatttggcggaaaaaca |
116 |
Q |
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| T |
7112313 |
atcacatactgaagtcatagatatcactagcctgtaagtattttcaatattaatactgcaattgatatgattttcatgcataaaagttgggggaaaat-- |
7112216 |
T |
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| Q |
117 |
caagaaaataaaactacatattgaatgttacaatttaatatcttctaccttaaataattttactatatttgatatg--gatttgttctttaccacattgc |
214 |
Q |
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| T |
7112215 |
---gaaaagtaaactacatattgaataataaaatttaatatcttctaacttatataattttactatctttaatgtgtggatttgttctttaccacgttgc |
7112119 |
T |
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| Q |
215 |
gccttcttgttttctattctctaactcaattt |
246 |
Q |
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| T |
7112118 |
gacttcttgttttctattctttaactcaattt |
7112087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 5794511 - 5794597
Alignment:
| Q |
161 |
ctaccttaaataattttactatatttgatatggatttgttctttaccacattg-cgccttcttgttttctattctctaactcaattt |
246 |
Q |
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| T |
5794511 |
ctaccttatataagttaactatctttgagatagatttgttctttatctcattgtcgccttcttgttttctatttcctaactcaattt |
5794597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 5696039 - 5696119
Alignment:
| Q |
170 |
ataattttactatatttgatatggatttgttctttaccacattg-cgccttcttgttttctattctctaactcaatttcaa |
249 |
Q |
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| T |
5696039 |
ataagtttattatctttgagattggtttgttctttatctcattgtcgccttcttgtttaatattctctaattcaatttcaa |
5696119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 9430290 - 9430207
Alignment:
| Q |
164 |
ccttaaataattttactatatttgatatggatttgttctttaccacattgcgccttcttgttttctattctctaactcaatttcaa |
249 |
Q |
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| T |
9430290 |
ccttatataattttactatctttgagatggatttgttctttatctcatt--gacatcttgctttctattctttaacccaatttcaa |
9430207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 9419147 - 9419064
Alignment:
| Q |
164 |
ccttaaataattttactatatttgatatggatttgttctttaccacattgcgccttcttgttttctattctctaactcaatttcaa |
249 |
Q |
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| T |
9419147 |
ccttatataattttactatctttgagatggatttgttttttatctcatt--gacatcttgctttctattctctaacctaatttcaa |
9419064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 18661101 - 18661167
Alignment:
| Q |
154 |
atatcttctaccttaaataattttactatatttgatatggatttgttctttaccacattgcgccttcttgt |
224 |
Q |
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||||||||||||||| ||||||||||| |||| || ||||||||||||||| |||||| ||||||||| |
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| T |
18661101 |
atatcttctaccttatataattttact----ttgagatagatttgttctttacctcattgcaccttcttgt |
18661167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 41484467 - 41484412
Alignment:
| Q |
184 |
tttgatatggatttgttctttaccacattg-cgccttcttgttttctattctctaa |
238 |
Q |
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| T |
41484467 |
tttgagatggatttgttctttacctcattgacgcattattgttttctattctctaa |
41484412 |
T |
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