View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_55 (Length: 245)
Name: NF1355_1D_low_55
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_55 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 25708142 - 25707898
Alignment:
| Q |
1 |
atggaagaagctattttcttcattgaaagagacccttttgcctcatggaaacaaattatgtttctcatccaagaacaaaagttttcttgcacttgcttac |
100 |
Q |
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| T |
25708142 |
atggaagaagctattttcttcattgaaagagacccttttgcctcatggaaacaaattatgtttctcatccaagaacaaaagttttcttgcacttgcttac |
25708043 |
T |
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| Q |
101 |
tcattcttgcagagtttgtttccaatccttgtttggttaaaagattacactatctctaaatttaaagatgatcttttagctggtttaactcttgcaagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25708042 |
tcattcttgcagagtttgtttccaatccttgtttggttaaaagattacactatctctaaatttaaagatgatcttttagctggtttaactcttgcaagtc |
25707943 |
T |
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| Q |
201 |
tttgcatacctcaggtatgtactaagaaacattatttttgtcttg |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25707942 |
tttgcatacctcaggtatgtactaagaaacattatttttgtcttg |
25707898 |
T |
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