View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_56 (Length: 241)
Name: NF1355_1D_low_56
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_56 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 9977386 - 9977170
Alignment:
| Q |
23 |
atctattgattcccttattactctactttattatttttccttctcttcttgcaacaataatcattataaggcgtaactcgtatttgacacacaatcgttt |
122 |
Q |
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| T |
9977386 |
atctattgattcccttgttactctactttataatttttccttcttttcttgcaacaataatcattataaggcgtaactcgtatttgacaca--atcgttt |
9977289 |
T |
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| Q |
123 |
ggaatatttgggaggttatatatggaattattttctcaactaagatattggtgatggaggaaattgaagatacaattatatccacctcttggaggttgta |
222 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9977288 |
ggaatatttgggaggttacatatggaattattttctcaactaagatattggtgatggaggaaattgaagatacaattatatccacctcttggaggatgta |
9977189 |
T |
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| Q |
223 |
tctagctacaagtggttgt |
241 |
Q |
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|||||| |||||||||||| |
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| T |
9977188 |
tctagcaacaagtggttgt |
9977170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 10007482 - 10007266
Alignment:
| Q |
23 |
atctattgattcccttattactctactttattatttttccttctcttcttgcaacaataatcattataa-ggcgtaactcgtatttgacacacaatcgtt |
121 |
Q |
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|||||||||||||| ||||| |||| ||||||||||||| ||| |||||||||||||||||||||||| || ||||||| |||||||||||||| |||| |
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| T |
10007482 |
atctattgattcccgtattattctagtttattatttttcgttcatttcttgcaacaataatcattataaaggtgtaactcttatttgacacacaaccgtt |
10007383 |
T |
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| Q |
122 |
tggaatatttgggaggttatatatggaattattttctcaactaagatattggtgatggaggaaattgaagatacaattatatccacctcttggaggttgt |
221 |
Q |
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| T |
10007382 |
tggaagatttgggaggttaaataaggaattattttctcaactaagatattggtgct---ggaaattgaagatgctattaaatccacctcttgaaggttat |
10007286 |
T |
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| Q |
222 |
atctagctacaagtggttgt |
241 |
Q |
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| T |
10007285 |
ttctagctacaaatggttgt |
10007266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 9996409 - 9996311
Alignment:
| Q |
146 |
ggaattattttctcaactaagatattggtgatggaggaaattgaagatacaattatatccacctcttggag---gttgtatctagctacaagtggttgt |
241 |
Q |
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| T |
9996409 |
ggaattattttctcaactaagatattggtgctggaggaaattgaagatgctattaaatccacctcttgaaggtcgttgtttctagctacaaatggttgt |
9996311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 9996497 - 9996429
Alignment:
| Q |
23 |
atctattgattcccttattactctactttattatttttccttctcttcttgcaacaataatcattataa |
91 |
Q |
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| T |
9996497 |
atctattgattcccgtattattctagtttattatttttcgttcatttcttgcaacaataatcattataa |
9996429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 9994679 - 9994615
Alignment:
| Q |
23 |
atctattgattcccttattactctactttattatttttccttctcttcttgcaacaataatcatt |
87 |
Q |
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||||||||||||| | ||||| ||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
9994679 |
atctattgattccgtcattacgatactttattatttctccttttcttcttgcaacaataatcatt |
9994615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 193
Target Start/End: Original strand, 3587505 - 3587648
Alignment:
| Q |
51 |
tattatttttccttctcttcttgcaacaataatcattataaggc-gtaactcgtatttgacacacaatcgtttggaatatttgggaggttatatatggaa |
149 |
Q |
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|||||||| || ||||||||||||||||||||||||| ||| | |||||| | ||||||||| ||| ||| ||| |||||||||| || |||||||| |
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| T |
3587505 |
tattatttctctttctcttcttgcaacaataatcattgtaaagatgtaacttctttttgacacataattgttcggatgatttgggaggctagatatggaa |
3587604 |
T |
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| Q |
150 |
ttattttctcaactaagatattggtgatggaggaaattgaagat |
193 |
Q |
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| T |
3587605 |
ttattttctcaactaagatattggtggaggaggaaattgtagat |
3587648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 5670832 - 5670789
Alignment:
| Q |
44 |
tctactttattatttttccttctcttcttgcaacaataatcatt |
87 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
5670832 |
tctactttattatttctcctcctcttcttgcaacaataatcatt |
5670789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 5680325 - 5680282
Alignment:
| Q |
44 |
tctactttattatttttccttctcttcttgcaacaataatcatt |
87 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
5680325 |
tctactttattatttctcctcctcttcttgcaacaataatcatt |
5680282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 5694477 - 5694434
Alignment:
| Q |
44 |
tctactttattatttttccttctcttcttgcaacaataatcatt |
87 |
Q |
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||||||| ||||||| |||| ||||||||||||||||||||||| |
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| T |
5694477 |
tctacttgattatttctcctcctcttcttgcaacaataatcatt |
5694434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 9414127 - 9414238
Alignment:
| Q |
53 |
ttatttttccttctcttcttgcaacaataatcattat-aaggcgtaactcgtatttgacacacaatcgtttggaatatttgggaggttatatatggaatt |
151 |
Q |
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|||||| |||| ||||||||||| ||| | ||||||| |||| |||||| ||| |||||||||| | ||||||| ||| ||||| || | || ||||| |
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| T |
9414127 |
ttatttctcctcctcttcttgcagcaagactcattataaaggtctaactcatatctgacacacaaccctttggaa-gtttaggaggatagaaattgaatt |
9414225 |
T |
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| Q |
152 |
attttctcaacta |
164 |
Q |
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||||||||||||| |
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| T |
9414226 |
attttctcaacta |
9414238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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