View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355_1D_low_57 (Length: 240)

Name: NF1355_1D_low_57
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355_1D_low_57
NF1355_1D_low_57
[»] chr2 (1 HSPs)
chr2 (154-218)||(38126465-38126529)
[»] chr7 (2 HSPs)
chr7 (107-160)||(38824882-38824935)
chr7 (1-48)||(38824788-38824835)
[»] chr1 (2 HSPs)
chr1 (107-160)||(41710188-41710241)
chr1 (1-48)||(41710082-41710129)
[»] chr5 (2 HSPs)
chr5 (113-160)||(3515737-3515784)
chr5 (3-48)||(3515627-3515672)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 38126529 - 38126465
Alignment:
Q  154 ccatgtatacagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgtttgtcta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38126529 ccatgtatacagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgtttgtcta 38126465  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 38824882 - 38824935
Alignment:
Q  107 gcatttcaattccctcacattagtgttccattctactttttaaaaatccatgta 160  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38824882 gcattccaattccctcaaattagtgttccattctactttttaaaaatccatgta 38824935  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38824788 - 38824835
Alignment:
Q  1 tcatcaaatatttttgttatggtcgtgggcaaaggaaattacatttat 48  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  38824788 tcatcaaatatttttgttatagtcgtgggcaaaggaaattacatttat 38824835  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 41710188 - 41710241
Alignment:
Q  107 gcatttcaattccctcacattagtgttccattctactttttaaaaatccatgta 160  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41710188 gcattccaattccctcaaattagtgttccattctactttttaaaaatccatgta 41710241  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41710082 - 41710129
Alignment:
Q  1 tcatcaaatatttttgttatggtcgtgggcaaaggaaattacatttat 48  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  41710082 tcatcaaatatttttgttatagtcgtgggcaaaggaaattacatttat 41710129  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 3515737 - 3515784
Alignment:
Q  113 caattccctcacattagtgttccattctactttttaaaaatccatgta 160  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3515737 caattccctcaaattagtgttccattctactttttaaaaatccatgta 3515784  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 3515627 - 3515672
Alignment:
Q  3 atcaaatatttttgttatggtcgtgggcaaaggaaattacatttat 48  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  3515627 atcaaatatttttgttatagtcgtgggcaaaggaaattacatttat 3515672  T

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