View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_6 (Length: 464)
Name: NF1355_1D_low_6
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Original strand, 40509937 - 40510373
Alignment:
| Q |
8 |
tggtgttctctcttctacatattaagcttcatattgcaagatttgagtatcaggcattaactggtattctacggtgacattggttcgtggatgaaatttt |
107 |
Q |
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| T |
40509937 |
tggtgttctctcttctacatattaagcttcatattgcaagatttgagtatcaggcattaattggtattctacggtgacattggttcgtggatgaaatttt |
40510036 |
T |
|
| Q |
108 |
cttttgagcatgtatagttgatgcgtcttagtttctgtaatctcgatttttcaatattataaatgcattannnnnnngtagtgctttctgactggcgtaa |
207 |
Q |
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| T |
40510037 |
cttttgagcatgtatagttgatgcgtcttagtttctgtaatctcgatttttcaatattataaatgcattatttttttgtagtgctttctgactggcgtaa |
40510136 |
T |
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| Q |
208 |
aaggattccagtataagaaaaggacaacctacgagcttcaagcctatgtagatgacggtagccttatttctgaaatcctcattgatcatgatgtgagttt |
307 |
Q |
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| T |
40510137 |
aaggattccagtataagaaaaggacaacctacgagcttcaagcctatgtagatgacggtagccttatttctgaaatcctcattgatcatgatgtgagttt |
40510236 |
T |
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| Q |
308 |
gttctaaaaaataatcttttaaagcgtgaactttatctttttgcagtactaagatgatcaatgatataatattttaggttgtacagaaaggaattggtta |
407 |
Q |
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| T |
40510237 |
gttctaaaaaataatcttttaaagcgtgagctttatctttttgccgtactaagatgatcaatgatataatatattaggttgtacagaaaggaattggtta |
40510336 |
T |
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| Q |
408 |
ttctcccatggaggtcactgcggctctttcttcttct |
444 |
Q |
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| T |
40510337 |
ttctcccatggaggtcactgcggctctttcttcttct |
40510373 |
T |
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