View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_72 (Length: 217)
Name: NF1355_1D_low_72
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_72 |
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| [»] chr3 (10 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27005662 - 27005446
Alignment:
| Q |
1 |
tcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27005662 |
tcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgt |
27005563 |
T |
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| Q |
101 |
atacaaaatccaaatccaaatccactgacagactttttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27005562 |
atacaaaatccaaatccaaatccactgacagactttttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaa |
27005463 |
T |
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| Q |
201 |
gaaggctgagttggtga |
217 |
Q |
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||||||||||||||||| |
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| T |
27005462 |
gaaggctgagttggtga |
27005446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 36810912 - 36810708
Alignment:
| Q |
4 |
agaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgtata |
103 |
Q |
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||||||||||||||||||||||| ||||||||||| || || ||||| |||| ||||||| ||| | |||||||| ||||||||||||||||| ||||| |
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| T |
36810912 |
agaagttgcatgttagggaacatgaaagcaaacatcttgatgtcttcttcttgcaaacgtaaatttttagccaaatggagagacttcacttgatggtata |
36810813 |
T |
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| Q |
104 |
caaaatccaaatccaaatccactgacagactt------tttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgc |
197 |
Q |
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| T |
36810812 |
cta---ctgaatccaaatccactgacggttttgagccatttcctatatttgttgactccattctgatctcagcgagcaaatgaaagttcctaaggagtgc |
36810716 |
T |
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| Q |
198 |
aaagaagg |
205 |
Q |
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|||||||| |
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| T |
36810715 |
aaagaagg |
36810708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 33708776 - 33708697
Alignment:
| Q |
138 |
tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtga |
217 |
Q |
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| T |
33708776 |
tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtga |
33708697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 33714611 - 33714532
Alignment:
| Q |
138 |
tccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggctgagttggtga |
217 |
Q |
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| T |
33714611 |
tccaatatttgttgactccattctgatctcagtgagcaaaggacagttcctaaggagtgcaaagaaggctgaattggtga |
33714532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 36875777 - 36875882
Alignment:
| Q |
1 |
tcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgt |
100 |
Q |
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|||||||||||||||||||| ||| | |||||||||||||| || |||||||||| |||| ||| ||||| |||||||| ||||||||||| ||||| || |
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| T |
36875777 |
tcaagaagttgcatgttaggaaacgtaaaagcaaacatgttgatgtcttcatcttgcaaatgtgaattgttagccaaatggagagacttcagttgatggt |
36875876 |
T |
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| Q |
101 |
atacaa |
106 |
Q |
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|||||| |
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| T |
36875877 |
atacaa |
36875882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 33396714 - 33396819
Alignment:
| Q |
1 |
tcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgt |
100 |
Q |
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|||||||| ||||| ||||| ||||| |||| ||||||| | || |||||||||| ||| ||| ||||| |||||||| ||||||||||||||||| || |
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| T |
33396714 |
tcaagaagctgcatattaggaaacataaaagaaaacatggtgatgtcttcatcttgcaattgtgaattgtaagccaaatggagagacttcacttgatggt |
33396813 |
T |
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| Q |
101 |
atacaa |
106 |
Q |
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|||||| |
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| T |
33396814 |
atacaa |
33396819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 37580713 - 37580608
Alignment:
| Q |
1 |
tcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgt |
100 |
Q |
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|||||||||||||| ||||| |||| ||||||||||||| || ||||||||| ||||| || |||| |||||||| ||||||||||||||||| || |
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| T |
37580713 |
tcaagaagttgcatattaggaaacaggaaagcaaacatgtggatgtcttcatctcgcaaacatgaattggaagccaaatggagagacttcacttgatggt |
37580614 |
T |
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| Q |
101 |
atacaa |
106 |
Q |
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|||||| |
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| T |
37580613 |
atacaa |
37580608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 33708910 - 33708805
Alignment:
| Q |
1 |
tcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgt |
100 |
Q |
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|||||||||||||| ||||| |||||||||||||| | || || | || ||||| |||| || ||||| |||||||| ||||||||||||||||| || |
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| T |
33708910 |
tcaagaagttgcatattaggaaacattaaagcaaatcttttgatgtgtttatcttgtaaacctgaattgtgagccaaatggagagacttcacttgatggt |
33708811 |
T |
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| Q |
101 |
atacaa |
106 |
Q |
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|||||| |
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| T |
33708810 |
atacaa |
33708805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 37580581 - 37580511
Alignment:
| Q |
136 |
tttccaatatctgctgactccattctgatctctgtgagcaaaggacagttcctaaggagtgcaaagaaggc |
206 |
Q |
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| T |
37580581 |
tttccaattcctgttgactccattttgatctcagtgagtaaaggacagttcttaaggagtgcaaacaaggc |
37580511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 33714745 - 33714640
Alignment:
| Q |
1 |
tcaagaagttgcatgttagggaacattaaagcaaacatgttaatatcttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgt |
100 |
Q |
| |
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||||||| |||||| | || ||||||||||||||| | || || | |||||||| ||||| || ||||| |||||||| |||||||||||| |||| || |
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| T |
33714745 |
tcaagaaattgcatacttggaaacattaaagcaaaccttttgatgtgttcatcttgcaaacctgaattgtgagccaaatggagagacttcacctgatggt |
33714646 |
T |
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| Q |
101 |
atacaa |
106 |
Q |
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|| ||| |
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| T |
33714645 |
attcaa |
33714640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 52093039 - 52093097
Alignment:
| Q |
48 |
ttcatctttcaaacgtggattgtcagccaaatagagagacttcacttgattgtatacaa |
106 |
Q |
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||||| |||||| ||||||||| | ||||||| |||||||||||||||| |||||||| |
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| T |
52093039 |
ttcatttttcaaccgtggattgcctgccaaatggagagacttcacttgagggtatacaa |
52093097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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