View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_74 (Length: 213)
Name: NF1355_1D_low_74
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_74 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 25707699 - 25707911
Alignment:
| Q |
1 |
gatacatttgactttttagaannnnnnngcttatattttgttacagagagagcgagtaagtaataacagacgcagatgcagacacttacacaagccatat |
100 |
Q |
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| T |
25707699 |
gatacatttgactttttagaattattttgcttatattttgttacagagagagcgagtaagtaataacagacgcagatgcaaacacttacacaagccatat |
25707798 |
T |
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| Q |
101 |
tgaggatcaacttttgccaaacttgcataacctatactctgcaacattcaaatgaaaaattgaagaataatatgaatataaatgttgctttttcacatgc |
200 |
Q |
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| T |
25707799 |
tgaggatcaacttttgccaaacttgcataacctatactctgcaacattcaaatgaaaaattgaagaataatatgaatataaatgttgctttttcacatgc |
25707898 |
T |
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| Q |
201 |
aagacaaaaataa |
213 |
Q |
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| T |
25707899 |
aagacaaaaataa |
25707911 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 33270914 - 33270975
Alignment:
| Q |
87 |
tacacaagccatattgaggatcaacttttgccaaacttgcataacctatactctgcaacatt |
148 |
Q |
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|||| ||||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||| |
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| T |
33270914 |
tacataagccatattgaggatcaagttttgctaaattagcataaccaatactctgcaacatt |
33270975 |
T |
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