View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1355_1D_low_78 (Length: 208)
Name: NF1355_1D_low_78
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_78 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 28945017 - 28944894
Alignment:
| Q |
80 |
ctgtttcctacactgaccttggagctttcaggtatataaatgtatcaactactcactgaaaacattatttccacatatatggagtatatcttagttagaa |
179 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28945017 |
ctgtttcctacaatgaccttggagctttcaggtatataaatgtatcaactactcactgaaaacattatttccacatatatggagtatatcttagttagaa |
28944918 |
T |
|
| Q |
180 |
agagtaaatagatattttagtttt |
203 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28944917 |
agagtaaatagatattttagtttt |
28944894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 37643100 - 37643188
Alignment:
| Q |
1 |
gcattgttttctaagttgcctacttctccaccaacatccttttttaaaatccacaggtaaaaattgtggtataccagacctgtttccta |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37643100 |
gcattgttttctaagttgcctacttctccaccaacatccttttttaaaatccacaggtaaaaattgtggtataccagacctgtttccta |
37643188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University