View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_79 (Length: 205)
Name: NF1355_1D_low_79
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 10152792 - 10152983
Alignment:
| Q |
8 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
107 |
Q |
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| T |
10152792 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattgacagcacttggtgc |
10152891 |
T |
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| Q |
108 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaacgatcttcatctcag |
199 |
Q |
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| T |
10152892 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaacgatcttcatatcag |
10152983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 10141171 - 10141362
Alignment:
| Q |
8 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
107 |
Q |
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| T |
10141171 |
gtgtagcattcagttgagagcagaaatcatgcatggcttgtgaagaacccatatcatagaggccgaaagattgtaagagagggttaaaagcacttggtgc |
10141270 |
T |
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| Q |
108 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaacgatcttcatctcag |
199 |
Q |
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| T |
10141271 |
aaggtaaccacttccaggaatggcatctttgttgtttttctttatatctataggaaggtcatgaagagcttcaatgaccattttcatctcag |
10141362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 10089535 - 10089725
Alignment:
| Q |
8 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
107 |
Q |
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| T |
10089535 |
gtgtagcattcaattgagagcagaaatcttgtatagcttgcgaagaacccatatcatagaggccgacagattctatgagagggttaaaaacacttggtcc |
10089634 |
T |
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| Q |
108 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaacgatcttcatctca |
198 |
Q |
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| T |
10089635 |
aaagtaaccacttccaggaatgacatctttattgtttttcttgatatccataggaaggtcgtgaagagctacaacaaccattttcatctca |
10089725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 10146183 - 10146360
Alignment:
| Q |
8 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
107 |
Q |
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| T |
10146183 |
gtgtgacattcagttgagagcagaaatcatgcatagcttatgaagcatccatgtcatagaggccgaaagattctaatagtgggtttaaagcacttggtgc |
10146282 |
T |
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| Q |
108 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaac |
185 |
Q |
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| T |
10146283 |
aaagtaaccccttccagaaatgacatctttgttgtttttcttgatatccataggaaggtcatgaagagcttcaacaac |
10146360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 11301207 - 11301017
Alignment:
| Q |
8 |
gtgtggcattcaattgagagcagaattcatgcacagcttgtgaagaacctaaatcatagaggcctaaagcttcatagagaggattaacagcacttggtgc |
107 |
Q |
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|||| |||||||||||||||||||| | || | ||||||||||||||| | |||||||||||| | || ||| || ||| |||| | || ||||| | |
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| T |
11301207 |
gtgtagcattcaattgagagcagaaatattgtatagcttgtgaagaacccatatcatagaggccaagagattctatgacagggttaaaaacagttggtcc |
11301108 |
T |
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| Q |
108 |
catgtaaccactaccagcaatgacatctttgttgtttttcttgatatccataggaagatcaagaagagcttgaacaacgatcttcatctca |
198 |
Q |
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| T |
11301107 |
aaagtaaccacttccaggaatgacatctttattgtttttcttcctatccataggaaggtcatgaagagctataacaactattttcatctca |
11301017 |
T |
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