View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355_1D_low_8 (Length: 423)

Name: NF1355_1D_low_8
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355_1D_low_8
NF1355_1D_low_8
[»] chr4 (17 HSPs)
chr4 (1-423)||(35969848-35970270)
chr4 (1-407)||(35974246-35974651)
chr4 (21-375)||(36634109-36634464)
chr4 (38-195)||(36641580-36641737)
chr4 (64-224)||(36663912-36664073)
chr4 (262-375)||(36641430-36641542)
chr4 (21-172)||(36661371-36661517)
chr4 (360-423)||(35970321-35970383)
chr4 (81-168)||(36632048-36632135)
chr4 (324-414)||(36911673-36911761)
chr4 (265-371)||(36663768-36663873)
chr4 (368-423)||(35970275-35970330)
chr4 (21-217)||(36911391-36911592)
chr4 (57-164)||(29678661-29678768)
chr4 (81-171)||(18361845-18361935)
chr4 (81-171)||(36600992-36601082)
chr4 (377-414)||(35970389-35970426)
[»] chr2 (1 HSPs)
chr2 (308-340)||(43429071-43429103)


Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 35969848 - 35970270
Alignment:
Q  1 ggtaacattcctcacatgcattttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  35969848 ggtaacattcctcacatgcattttcataagattgattttgcagtgataatcaacattgttaccttttctgcctacaggacgataaatcatccaatgaaga 35969947  T
Q  101 gaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  35969948 gaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttatttgcg 35970047  T
Q  201 agcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttactacatgtttgatttgccaagcacttggtctatcacacgac 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970048 ggcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttactacatgtttgatttgccaagcacttggtctatcacacgac 35970147  T
Q  301 ctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35970148 ctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttatttagcgaccatctcagagtatgtctc 35970247  T
Q  401 ggatactatattgttgtgatata 423  Q
    |||||||||||||||||||||||    
T  35970248 ggatactatattgttgtgatata 35970270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 35974246 - 35974651
Alignment:
Q  1 ggtaacattcctcacatgcattttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||| |||||||  ||||| |||||||||||||| ||||    
T  35974246 ggtaacattcctcacatgcattttcataagattgattttgcagtaataactgacattgttactttctctgcctttaggacaataaatcatccaatgaaga 35974345  T
Q  101 gaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgca 200  Q
     ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35974346 taaggtggggaagcaccaacctatcaccgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgcg 35974445  T
Q  201 agcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttactacatgtttgatttgccaagcacttggtctatcacacgac 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||| |||||||||| || ||     
T  35974446 agcctttcttttaagatattagataagtgactgaaaaa-aatcaattttcatgactttactacatgtttgatttgccaagcatttggtctatcgcatgat 35974544  T
Q  301 ctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||     
T  35974545 ctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatataattaattagcgaccatctcagagtatgtctt 35974644  T
Q  401 ggatact 407  Q
    |||||||    
T  35974645 ggatact 35974651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 36634464 - 36634109
Alignment:
Q  21 ttttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaac 120  Q
    |||||||| |||| |||||||||||| ||   ||| |||| ||||||||||||  |||| ||| ||| ||| ||| | || |||||||  ||||||||||    
T  36634464 ttttcatatgattaattttgcagtgacaactgacagtgtttctttttctgcctttaggaggattaataatcaaatgacgataaggtggataagcaccaac 36634365  T
Q  121 ataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgcaagcctttcttttaagatatt 220  Q
     ||||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||| ||  | |||||||||||||| ||     
T  36634364 ctaacaacaactctccacttctagataatgagcagtgaagagttctcatatttcatacaaattacgatgccttctctgtgaacctttcttttaagacatc 36634265  T
Q  221 agataagtgactgaaaaagaatcaaattttctgactttact---acatgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtcc 317  Q
    |||||||| ||||||||| | |||  ||  |||||||||||   ||||||||||||||  ||||| |||||  |||||| || |||||||||||||||||    
T  36634264 agataagtaactgaaaaata-tcagtttggctgactttactgaaacatgtttgatttgagaagcatttggttgatcacatgaactcttcatttgaggtcc 36634166  T
Q  318 atgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttatt 375  Q
    ||||| |||||||| ||| |||||||||||||| |||||| ||||| |||||||||||    
T  36634165 atgag-ttcatctaactggtagtctccaattttaaagccaaattgtaatatacttatt 36634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 36641737 - 36641580
Alignment:
Q  38 ttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctcca 137  Q
    |||||||||||||  ||| ||||| |||||||||||  |||| |||||||||||   | |||| |||  || ||||||||||  ||||| ||||||||||    
T  36641737 ttgcagtgataattgacagtgttattttttctgcctttaggatgataaatcatcagctgaagataagaaggagaagcaccaatctaacaccgactctcca 36641638  T
Q  138 cttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttct 195  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  36641637 cttctagataatgggcagtgaagagttctcatatttcatacaaattacgatgccttct 36641580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 36664073 - 36663912
Alignment:
Q  64 ttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagt 163  Q
    ||||||||||  |||| ||||||||||| ||| ||||  |||||| ||||| ||||| ||||| |||||| ||||||||||||||||| |||||||||||    
T  36664073 ttttctgcctttaggatgataaatcatcaaatgaagatgaggtggagaagcgccaacctaacaccgactcaccacttctagataatggccagtgaagagt 36663974  T
Q  164 tctcatatttcc-tacaagttacaatgtcttctttgcaagcctttcttttaagatattagat 224  Q
    ||||||||| || | |  ||||||||| || |||||  | ||||||||||||||||| ||||    
T  36663973 tctcatattgcctttcttgttacaatgcctcctttgtgaacctttcttttaagatatcagat 36663912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 262 - 375
Target Start/End: Complemental strand, 36641542 - 36641430
Alignment:
Q  262 acatgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatatt 361  Q
    |||||||||| ||| |||||| |||||| |||||| || |||||||||||||||||||||  || ||||| ||| |||||||||||||| |||||| |||    
T  36641542 acatgtttgacttgacaagcatttggtcgatcacatgaactcttcatttgaggtccatga-ctttatctaactggtagtctccaattttaaagccaaatt 36641444  T
Q  362 gtgatatacttatt 375  Q
    || |||||||||||    
T  36641443 gtaatatacttatt 36641430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 36661517 - 36661371
Alignment:
Q  21 ttttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaac 120  Q
    |||||||| ||||| ||||||||||| | |  ||| |||||||||||||||||  ||     ||||||||| ||| ||||  |||| | ||||| |||||    
T  36661517 ttttcatatgattgtttttgcagtgacagttgacagtgttactttttctgcctttag-----taaatcatcaaataaagatgaggtcgagaagcgccaac 36661423  T
Q  121 ataacagcgactctccacttctagataatgggcagtgaagagttctcatatt 172  Q
     ||||| | |||||||||||||||||||||| ||||||||||||||||||||    
T  36661422 ctaacacctactctccacttctagataatggccagtgaagagttctcatatt 36661371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 35970321 - 35970383
Alignment:
Q  360 ttgtgatatacttattcagcgaccatctcagagtatgtctcggatactatattgttgtgatata 423  Q
    |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  35970321 ttgtgatatacttatttagcgaccatctcagagtatggctcggata-tatattgttgtgatata 35970383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 36632048 - 36632135
Alignment:
Q  81 gataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctca 168  Q
    ||||||||||| ||| |||| ||||||| ||||||||||| ||||| | ||||| ||||||||||||||| ||| |||||||||||||    
T  36632048 gataaatcatcaaatgaagataaggtggagaagcaccaacctaacatcaactcttcacttctagataatgtgcattgaagagttctca 36632135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 414
Target Start/End: Original strand, 36911673 - 36911761
Alignment:
Q  324 ttcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctcggatactatattgt 414  Q
    |||||||||||||| |||||||||||| |||||| |||||  |||||||||| ||| ||||||||||||||||| | |||||||| |||||    
T  36911673 ttcatctagctgatggtctccaattttaaagccaaattgt--tatacttatttagctaccatctcagagtatgtatgggatactaaattgt 36911761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 36663873 - 36663768
Alignment:
Q  265 tgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtg 364  Q
    ||||||||||| ||||   ||||||||||||| ||  ||||||||||||||||||||| ||||||||| || |||||||||||||| |||| | |||||     
T  36663873 tgtttgatttgacaagtgtttggtctatcacatgagttcttcatttgaggtccatgag-ttcatctagttggtagtctccaattttaaagcgaaattgta 36663775  T
Q  365 atatact 371  Q
    |||||||    
T  36663774 atatact 36663768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 368 - 423
Target Start/End: Original strand, 35970275 - 35970330
Alignment:
Q  368 tacttattcagcgaccatctcagagtatgtctcggatactatattgttgtgatata 423  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  35970275 tacttatttagcaaccatctcagagtatgtctgggatactatattgttgtgatata 35970330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 36911391 - 36911592
Alignment:
Q  21 ttttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaac 120  Q
    |||| ||| |||||||||  |||||| ||| || | |||||||||||||||||  ||||||| |||||||| | | |||| ||||||| |||||||  |     
T  36911391 tttttatatgattgatttcacagtgacaattaaaagtgttactttttctgcctttaggacgacaaatcatcaattgaagataaggtggagaagcactgat 36911490  T
Q  121 ataacagcgactctccacttctagataatg----ggcagtgaagagttctcatatttcc-tacaagttacaatgtcttctttgcaagcctttcttttaag 215  Q
     ||||  | ||| |||||||||||||||||    |  |||||||||||||||||   || |||||||||||||| ||||||||  | | |||||||||||    
T  36911491 ctaactccaactgtccacttctagataatgaactgatagtgaagagttctcataccaccttacaagttacaatgccttctttgtgaacttttcttttaag 36911590  T
Q  216 at 217  Q
    ||    
T  36911591 at 36911592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 29678661 - 29678768
Alignment:
Q  57 tgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagt 156  Q
    ||||||||||||  |||  |||| |||||||| || ||| |||| |||| || ||||||||||| |||||   |||||| |||||||||||| |||||||    
T  29678661 tgttactttttccacctttaggaagataaatcgtcaaatgaagataaggcggagaagcaccaacctaacacaaactctcaacttctagataaagggcagt 29678760  T
Q  157 gaagagtt 164  Q
    ||||||||    
T  29678761 gaagagtt 29678768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 18361845 - 18361935
Alignment:
Q  81 gataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatat 171  Q
    ||||||||||| ||| |||| ||||| | ||||| ||||| | ||||  ||||||||||||| |||||||||||||||| |||| ||||||    
T  18361845 gataaatcatctaatgaagataaggttgagaagctccaaccttacagaaactctccacttcttgataatgggcagtgaaaagttatcatat 18361935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 36601082 - 36600992
Alignment:
Q  81 gataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatat 171  Q
    ||||||||||| ||| |||| ||||| | ||||| ||||| | ||||  ||||||||||||| |||||||||||||||| |||| ||||||    
T  36601082 gataaatcatctaatgaagataaggttgagaagctccaaccttacagaaactctccacttcttgataatgggcagtgaaaagttatcatat 36600992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 35970389 - 35970426
Alignment:
Q  377 agcgaccatctcagagtatgtctcggatactatattgt 414  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  35970389 agcgaccatcttagagtatgtctcagatactatattgt 35970426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 43429103 - 43429071
Alignment:
Q  308 tttgaggtccatgagattcatctagctgatagt 340  Q
    |||||||||||||||||||||||||||| ||||    
T  43429103 tttgaggtccatgagattcatctagctggtagt 43429071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University