View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_2D_low_3 (Length: 308)
Name: NF1355_2D_low_3
Description: NF1355_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_2D_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 30018841 - 30019096
Alignment:
| Q |
17 |
acatcaaagttttaaatattaaccaagataagcaaaactatagtaacatcaaataaattattcaattaaaattttctatctcatgacataagcaaaacta |
116 |
Q |
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| T |
30018841 |
acatcaaagttttaaatattaaccaagataagcaaaactatagtaacatcaaataaattattcaattaaaattttctatctcatgacataagcaaaatta |
30018940 |
T |
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| Q |
117 |
tactacttaatgcaagttttataggtaggtaaacggtccatcaatttcaacacatgtgtgagattaagtggtggcctagagaatgtataccatgt---at |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || |
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| T |
30018941 |
tactacttaatgcaagttttataggtaggtaaacggtccatcaatttcaacacatgtgtgagatgaagtggtggcctagagaatgtatatcatgtatgat |
30019040 |
T |
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| Q |
214 |
gattgatcatgcataccatagaagcatataac---taagtgtggaatatatcctct |
266 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30019041 |
gattgatcatgcataccatagaagcatataacttataagtgtggaatatatcctct |
30019096 |
T |
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