View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1355_2D_low_6 (Length: 242)
Name: NF1355_2D_low_6
Description: NF1355_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_2D_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 353342 - 353545
Alignment:
| Q |
20 |
cgacctataactcaatgatttctatgttttgttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
353342 |
cgacctataactcaatgatttctatgttttgttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcc |
353441 |
T |
|
| Q |
120 |
tgatattcagacatattatcacccattgatcaagtcatgctttaaaatgagaaaagtagatacttggttgaatgatatattaagtgacatggtaaataaa |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
353442 |
tgatattcagacttattatcacccattgatcaagtcatgctttaaaatgagaaaagtagatacttggttgaatgatatattaagtgacatggtaaataaa |
353541 |
T |
|
| Q |
220 |
tatc |
223 |
Q |
| |
|
|||| |
|
|
| T |
353542 |
tatc |
353545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 10580122 - 10580322
Alignment:
| Q |
20 |
cgacctataactcaatgatttctatgttttgttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcc |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10580122 |
cgacctataactcaatggtttctatgttttgttactatgcacgtgaagagagagcttttggaatactgaaggagatggaaaaatcaggtctttgtaagcc |
10580221 |
T |
|
| Q |
120 |
tgatattcagacatattatcacccattgatcaagtcatgctttaaaatgagaaaagtagatacttggttgaatgatatattaagtgacatggtaaataaa |
219 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
10580222 |
ggatattcagac---ttttcacccattgatcaagtcatgctttaaaatgagagaaatagatacttggttgaatgatatattaaatgatatggtaaataaa |
10580318 |
T |
|
| Q |
220 |
tatc |
223 |
Q |
| |
|
|||| |
|
|
| T |
10580319 |
tatc |
10580322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 24578529 - 24578729
Alignment:
| Q |
20 |
cgacctataactcaatgatttctatgttttgttactatgcacaaaaagagagagcttttgacatactgaaggagatggaaaaatcaggtctatgtaagcc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24578529 |
cgacctataactcaatgatttctatgttttgttactatgcacaagaagagagagcttttggcatactgaaggagatggaaaaatcaggtctttgtaagcc |
24578628 |
T |
|
| Q |
120 |
tgatattcagacatattatcacccattgatcaagtcatgctttaaaatgagaaaagtagatacttggttgaatgatatattaagtgacatggtaaataaa |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24578629 |
tgatattcagac---ttatcacccattgatcaagtcatgctttaaaatgagggaaatagatacttggttgaatgatatattaaatgacatggtaaataaa |
24578725 |
T |
|
| Q |
220 |
tatc |
223 |
Q |
| |
|
|||| |
|
|
| T |
24578726 |
tatc |
24578729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University