View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_2D_low_8 (Length: 239)
Name: NF1355_2D_low_8
Description: NF1355_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_2D_low_8 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 41613754 - 41613627
Alignment:
| Q |
15 |
catcaatgcatcaaaaccatccaattcaaatgcactcacatatttgagttatgataatctccattttctccattactatatagttttgaaaacataaatg |
114 |
Q |
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| T |
41613754 |
catcaatgcatcaaaaccatccaattcaaatgcagtcacatctttgagttaagataatctccattttctccattactatatagttttgaaaacataaatg |
41613655 |
T |
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| Q |
115 |
caaaaatatgacattaaataagtccaaa |
142 |
Q |
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| T |
41613654 |
caaaaatgtgacattaaataaatccaaa |
41613627 |
T |
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Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 41613533 - 41613438
Alignment:
| Q |
144 |
gaatgtgtcggtcgggttacaaattatagacattcgattcaagatattgaatggtggactatagtcctaattctattaggaaattcctttttagaa |
239 |
Q |
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| T |
41613533 |
gaatgtgtcggtcgggttgcaaattatagacattcgattcaagatattgaatggtggactatagtcctaattctattaggaaattcctttttagaa |
41613438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 155612 - 155546
Alignment:
| Q |
72 |
tctccattttctccattactatatagttttgaaaacataaatgcaaaaatatgacattaaataagtcca |
140 |
Q |
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| T |
155612 |
tctccatttgttccattactata--gttttggaaatataaatgcaaaagtgtgacattaaatgagtcca |
155546 |
T |
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