View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13560_low_2 (Length: 529)
Name: NF13560_low_2
Description: NF13560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13560_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 5 - 514
Target Start/End: Original strand, 25014993 - 25015501
Alignment:
| Q |
5 |
ccaagaaaattacacatacacctcactctaattaaaatcactttgtttactcttataaatctatgaaagacttgattatatgaaactctttgcatataag |
104 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25014993 |
ccaacaaaattacacatacacctcactctaattaaaatcactttgtttactcttataaatctatgaaagacttgattatatgaaactctttgcatataag |
25015092 |
T |
|
| Q |
105 |
aatgcatgtaatcctaataccacaccgacaaaatcacacatatattcactctaacaaaaatcactttgtttacaataagtgttctctatgaaaagacttg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25015093 |
aatgcatgtaatcctaataccacaccgacaaaatcacacatatattcactctaacaaaa-tcactttgtttacaataagtgttctctatgaaaagacttg |
25015191 |
T |
|
| Q |
205 |
aaatcatttaaaatgctaaaggcacagttaaaatgtttttacaagttctttgtaaaagaatttttcttcaaataaggcagagtgttttataagcaggcat |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25015192 |
aaatcatttaaaatgctaaaggcacagttaaaatgtttttacaagttctttgtcaaagaatttttcttcaaataaggcagtgtgttttataagcaggcat |
25015291 |
T |
|
| Q |
305 |
tgaagataagccacaaagaactgactaattttattctaaaatgtggtccgatcatacagatggctggaggaggcttgtgcgctgtttttaacgttgtgcc |
404 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25015292 |
tgaagataagccacaaagcactgactaattttattctaaaatgtggtccgatcatacagatggctggaggaggcttgtgcgctgtttttaacgttgtgcc |
25015391 |
T |
|
| Q |
405 |
tatttttcggggctatatattttattttctggtttttaagctgaaacatgagctcaagacttggagtaaannnnnnnnnnggagatgttcatctactagt |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25015392 |
tatttttcggggctatatattttattttctggtttttaagttgaaacatgagctcaagacttggagtaaattttttttttggagatgttcatctactagt |
25015491 |
T |
|
| Q |
505 |
ggatgtagct |
514 |
Q |
| |
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|||||||||| |
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| T |
25015492 |
ggatgtagct |
25015501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 99 - 392
Target Start/End: Original strand, 24992564 - 24992855
Alignment:
| Q |
99 |
tataagaatgcatgtaatcctaataccacaccgacaaaatcacacatatattcactctaacaaaaatcactttgtttacaataagtgttctctatgaaaa |
198 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24992564 |
tataagaatgcatgtaatcctaatactacaccaacaaaattacacatatattcactctaacaaaaatcactttgtttacaataagtgt--tctatgaaaa |
24992661 |
T |
|
| Q |
199 |
gacttgaaatcatttaaaatgctaaaggcacagttaaaatgtttttacaagttctttgtaaaagaatttttcttcaaataaggcagagtgttttataagc |
298 |
Q |
| |
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||||||||||||||| ||| || ||||||||||| ||||||||||||| || ||||| || ||||||||||||||||||| | ||||||||||| |
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| T |
24992662 |
gacttgaaatcattttaaaagcacaaggcacagtttaaatgtttttacagattatttgtcaaggaatttttcttcaaataagactatttgttttataaga |
24992761 |
T |
|
| Q |
299 |
aggcattgaagataagccacaaagaactgactaattttattctaaaatgtggtccgatcatacagatggctggaggaggcttgtgcgctgtttt |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| |||| | | |||||| |||||||| ||||||| |
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|
| T |
24992762 |
aggcattgaagataagccacaaagaactgactaattttattttgatatgtggtccgatcattcagaggacaggaggacgcttgtgcactgtttt |
24992855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 24991476 - 24991548
Alignment:
| Q |
5 |
ccaagaaaattacacatacacctcactctaattaaaatcactttgtttactcttataaatctatgaaagactt |
77 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||| ||||||||||||| ||| |||||||||||||||| |
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| T |
24991476 |
ccaacaaaattacacatatacctcaatctaattaaaaacactttgtttactattagtaatctatgaaagactt |
24991548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 96 - 308
Target Start/End: Complemental strand, 33531915 - 33531714
Alignment:
| Q |
96 |
gcatataagaatgcatgtaatcctaataccacaccgacaaaatcacacatatattcactctaacaaaaatcactttgtttacaataagtgttctctatga |
195 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||| ||||| | || |
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| T |
33531915 |
gcatataagaatgcatgtaatccttgtaccacaccaacaaaattacacatatattcactctaacaaagatcact--------aataaaagttct--aaga |
33531826 |
T |
|
| Q |
196 |
aaagacttgaaatcatttaaaatgctaaaggcacagttaaaatgtttttacaagttctttgtaaaagaatttttcttcaaataaggcagagtgttttata |
295 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| || |||| |||||| |
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| T |
33531825 |
aaagacttgaaatcattttaaa-gctaaaggttcagttaaaatgtttttacaagttctttgtcaaagaatttttcttcaactaagacaaagtgctttata |
33531727 |
T |
|
| Q |
296 |
agcaggcattgaa |
308 |
Q |
| |
|
|| |||||||||| |
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|
| T |
33531726 |
agaaggcattgaa |
33531714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 96 - 308
Target Start/End: Original strand, 16869432 - 16869633
Alignment:
| Q |
96 |
gcatataagaatgcatgtaatcctaataccacaccgacaaaatcacacatatattcactctaacaaaaatcactttgtttacaataagtgttctctatga |
195 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||| ||||| | || |
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| T |
16869432 |
gcatataagaatgcatgtaatccttgtaccacaccaacaaaattacacatatattcactctaacaaagatcact--------aataaaagttct--aaga |
16869521 |
T |
|
| Q |
196 |
aaagacttgaaatcatttaaaatgctaaaggcacagttaaaatgtttttacaagttctttgtaaaagaatttttcttcaaataaggcagagtgttttata |
295 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| || |||| |||||| |
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| T |
16869522 |
aaagacttgaaatcattttaaa-gctaaaggttcagttaaaatgtttttacaagttctttgtcaaagaatttttcttcaactaagacaaagtgctttata |
16869620 |
T |
|
| Q |
296 |
agcaggcattgaa |
308 |
Q |
| |
|
|| |||||||||| |
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|
| T |
16869621 |
agaaggcattgaa |
16869633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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