View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_high_15 (Length: 372)

Name: NF13561_high_15
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13561_high_15
NF13561_high_15
[»] chr1 (1 HSPs)
chr1 (50-344)||(7812031-7812325)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 50 - 344
Target Start/End: Original strand, 7812031 - 7812325
Alignment:
Q  50 tatcactaaatgaagacatgaaaacatacatatatatggtacagttattttagtcataaaaattcagattttgagagtataaataagtcacaaccaattg 149  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  7812031 tatcactaaatgaagacatgaaaacatacatatatatgttacagttattttagtcataaaaattgagattttgagagtataaataagtcacgaccaattg 7812130  T
Q  150 ctaagcgaattcaacaaattacacatttcaattcacatggtcacttcatctgaacccttgagtttattcaacaaatgcnnnnnnnattcaccttctttaa 249  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||    
T  7812131 ctaagcgaattcaaaaaattacacatttcaattcacatggtcacttcatctggacccttgagtttattcaacaaatgctttttttattcaccttctttaa 7812230  T
Q  250 atttgaatggatggatgggtcaaaatttcagattaaatttaaatggatttgttgactacacaaagttcaaacctgaccaaagagttgtttaaagg 344  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7812231 atttgaatggatggatgggtcaaaacttcagattaaatttaaatggatttgttgactacacaaagttcaaacctgaccaaagagttgtttaaagg 7812325  T

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