View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_high_17 (Length: 334)

Name: NF13561_high_17
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13561_high_17
NF13561_high_17
[»] chr5 (8 HSPs)
chr5 (1-323)||(24005430-24005752)
chr5 (64-221)||(23940703-23940860)
chr5 (56-232)||(24112147-24112323)
chr5 (56-151)||(25613658-25613753)
chr5 (46-154)||(31261808-31261916)
chr5 (56-151)||(32430126-32430221)
chr5 (70-154)||(14307935-14308019)
chr5 (192-232)||(32430042-32430082)
[»] chr3 (2 HSPs)
chr3 (64-239)||(43694073-43694248)
chr3 (116-239)||(43685016-43685139)
[»] chr1 (2 HSPs)
chr1 (46-306)||(15498040-15498307)
chr1 (56-136)||(37997263-37997343)
[»] scaffold1089 (1 HSPs)
scaffold1089 (70-153)||(1239-1322)
[»] chr4 (1 HSPs)
chr4 (74-171)||(51016819-51016916)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 24005752 - 24005430
Alignment:
Q  1 ccgcgtcgaggaacttcatctcctcctcgataatgtaacattgaagaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  24005752 ccgcgtcgaggaacttcatctcctcctcgataatgtaacattgaagaatctcacgattttcacctccagaaccctagttgttgtcaaacttgcgagctta 24005653  T
Q  101 aaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaacttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||    
T  24005652 aaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttcttttgaaactcagaataatttcagtaaacttc 24005553  T
Q  201 ttaaagcttgtcctattctacaaaatttgcatgcttcttttctgatatataggagacatgatgaaaataataaagtagaagaattcaaacccttgttctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  24005552 ttaaagcttgtcctattctacaaaatttgcatgcttcttttctgttatataggagagctgatgaaaataataaagtagaagaattcaaacccttgttctt 24005453  T
Q  301 gtccaaattggttagagcccgat 323  Q
    |||||||||||||||||||||||    
T  24005452 gtccaaattggttagagcccgat 24005430  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 23940860 - 23940703
Alignment:
Q  64 ctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatat 163  Q
    ||||| ||||||||||| | ||||||||||||| ||||||||||||  ||| |||||||||||||||||||||  ||||||||| |||||| |  |  ||    
T  23940860 ctccaaaaccctagttgatctcaaacttgagagattaaaagttgaaactgataatttgtgtgttgatcttccatctctcaaaactctacatttgggtcat 23940761  T
Q  164 gtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctac 221  Q
    ||| ||||| | | ||||||| ||||||||||||||||||| |||||||| |||||||    
T  23940760 gttagttttcacaatcggaatgatttcatgaaacttcttaatgcttgtccaattctac 23940703  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 24112147 - 24112323
Alignment:
Q  56 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatc 155  Q
    |||||||||||   ||||||| ||||| ||||||||||| ||||| | ||||||  | | ||||| | |||||||||||||  |||||||| ||||  |     
T  24112147 attttcacctctcaaaccctatttgttctcaaacttgagtggttacatgttgaaaattataatttctatgttgatcttccatctctcaaaatcctaggtt 24112246  T
Q  156 taagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaatttgcat 232  Q
    | | ||||||||||| ||||| || |||| ||||||| || |||||||| |||||||||||||||||| ||||||||    
T  24112247 tgaaatatgtttgttgtgaaaatcagaatgatttcattaagcttcttaatgcttgtcctattctacaagatttgcat 24112323  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 25613658 - 25613753
Alignment:
Q  56 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaacccta 151  Q
    ||||||||||||| ||||||||||||| | ||||||||||| |||  |||| ||| |||||||||||||||||||||||||  |||||||| ||||    
T  25613658 attttcacctccaaaaccctagttgttctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctctcaaaatccta 25613753  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 31261808 - 31261916
Alignment:
Q  46 gaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaa 145  Q
    ||||| ||| ||||| ||||||  |||||||||| || | ||||||||||| |||  |||| ||| |||||||||||||||||||||||||  |||||||    
T  31261808 gaatcccacaattttaacctcccaaaccctagttattctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctctcaaa 31261907  T
Q  146 accctacat 154  Q
    | |||||||    
T  31261908 atcctacat 31261916  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 32430221 - 32430126
Alignment:
Q  56 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaacccta 151  Q
    |||||||||||||||||||| ||| || |||||||| |||  |||||| ||| || ||| ||||||||| |||||||||||   ||||||||||||    
T  32430221 attttcacctccagaacccttgttattctcaaacttcagaacttaaaaattgtagctgataatttgtgttttgatcttccatcgctcaaaacccta 32430126  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 14307935 - 14308019
Alignment:
Q  70 aaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacat 154  Q
    |||||| |||||| |||||||||||||| ||  ||||| | ||||   ||| ||||||||||||||| | || ||||||||||||    
T  14307935 aacccttgttgttctcaaacttgagagggtacgagttgcaagtgatcgtttttgtgttgatcttccatagcttaaaaccctacat 14308019  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 32430082 - 32430042
Alignment:
Q  192 tgaaacttcttaaagcttgtcctattctacaaaatttgcat 232  Q
    ||||||||||||| ||||||||||||||| || ||||||||    
T  32430082 tgaaacttcttaatgcttgtcctattctagaagatttgcat 32430042  T

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Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 43694248 - 43694073
Alignment:
Q  64 ctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatat 163  Q
    |||| ||||||||||| || | |||||||||  ||||||| || ||  ||| ||||||||||||||||||||| | ||||||||||||||| | |  |||    
T  43694248 ctcccgaaccctagttattctgaaacttgagcagttaaaaattcaatctgataatttgtgtgttgatcttccatagctcaaaaccctacatttcaactat 43694149  T
Q  164 gtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaatttgcatgcttctt 239  Q
    ||| ||||| ||| |  |||| ||||||| ||||||||||| ||||||||  |||||||| |||||||||||||||    
T  43694148 gttagttttaaaaataagaatgatttcataaaacttcttaatgcttgtccacttctacaagatttgcatgcttctt 43694073  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 43685139 - 43685016
Alignment:
Q  116 aatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtccta 215  Q
    |||||||||||| ||||||||   ||||||||||||||| | | ||| ||| ||||| ||| |  |||| ||||| ||||||||||||| ||||||||||    
T  43685139 aatttgtgtgttaatcttccatcgctcaaaaccctacatttcaaatacgttagttttaaaaataagaatgatttcttgaaacttcttaatgcttgtccta 43685040  T
Q  216 ttctacaaaatttgcatgcttctt 239  Q
    || ||||| ||||| |||||||||    
T  43685039 ttgtacaagatttggatgcttctt 43685016  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 306
Target Start/End: Original strand, 15498040 - 15498307
Alignment:
Q  46 gaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttc-------caaa 138  Q
    ||||| ||| |||||||||||    |||||||||||| |||||| || ||||||| || |||||| |||||||||||||||| ||||||       ||||    
T  15498040 gaatcccacaattttcacctctcataccctagttgttctcaaacatgcgaggttacaacttgaagctgaaaatttgtgtgttcatcttccatctctcaaa 15498139  T
Q  139 tctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaatttgcatgcttct 238  Q
      ||||||||||| || | | || |||  |||||||||  |  ||| || |||||||||||||||| |||||||||| ||||||| ||||||||  ||||    
T  15498140 agtcaaaaccctatatttgaaatttgtccgttttgaaaagcataatgatgtcatgaaacttcttaatgcttgtcctaatctacaagatttgcatatttct 15498239  T
Q  239 tttctgatatataggagacatgatgaaaataataaagtagaagaattcaaacccttgttcttgtccaa 306  Q
      ||  ||||||| ||||| | | || |||| | | | |||||| || ||| ||||||||||||||||    
T  15498240 catcctatatatatgagacgtaacgagaatagtgaggcagaagagtttaaatccttgttcttgtccaa 15498307  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 37997343 - 37997263
Alignment:
Q  56 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttcca 136  Q
    ||||||| ||||  |||||| |||||| |||||||| | |||||||| |||| |  ||| | |||||||||||||||||||    
T  37997343 attttcatctcccaaacccttgttgttctcaaacttaaaaggttaaatgttggaaatgatactttgtgtgttgatcttcca 37997263  T

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Target: scaffold1089 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 1322 - 1239
Alignment:
Q  70 aaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctaca 153  Q
    ||||||||||||| ||||||||||  ||||| ||||||||| |||||||||||||  |||||||||    ||||||||||||||    
T  1322 aaccctagttgttctcaaacttgaatggttacaagttgaagttgaaaatttgtgtcgtgatcttccgtccctcaaaaccctaca 1239  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 51016916 - 51016819
Alignment:
Q  74 ctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttgttt 171  Q
    ||||||||| | ||||||||||| |||||| ||||| |||| || |||||| |||||||||||    |||||||||||||| | | ||||||| ||||    
T  51016916 ctagttgttataaaacttgagagattaaaaattgaaagtgataagttgtgtattgatcttccatcgttcaaaaccctacatttgaaatatgttggttt 51016819  T

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