View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_high_18 (Length: 332)

Name: NF13561_high_18

Description: NF13561

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13561_high_18

[»] chr3 (1 HSPs)

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 220; E-Value: 1e-121

Query Start/End: Original strand, 16 - 316

Target Start/End: Complemental strand, 47752331 - 47752032

Alignment:

Q	16	catcacttcaatcatcatataataaaaacaagaaaacaacataatcattacagggccatatccaacattaattaaagatataaaaataacaacttttctt	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	47752331	catcacttcaatcatcatataataaaaacaagaaaacaacataatcattacagggccatatccaacattaattaaagatataaaaataacaacttttctt	47752232	T

Q	116	tggtggacataaaaataacaactttttaaagcaaaaacacattttgaaggtaatagtaaaaaagactannnnnnnnnnnnnnnnnnngactgaaaccaac	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	47752231	tggtggacataaaaataagaactttttaaagcacaaacacattttgaagggaatagta-aaaagcctattttttattttttatttttgactgaaaccaac	47752133	T

Q	216	cttgtgattgtgatctaccaagagcttccatgatacaaagtgatccatctgacttgataggcataacagtcaaattaggtgaatgaaagttgttaccatt	315	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	47752132	cttgtgattgtgatctaccaagagcttccatgatacaaagtgatccatctgacttgataggcataacagtcaaattaggtgaatgaaagttgttaccatt	47752033	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]