View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_high_20 (Length: 322)
Name: NF13561_high_20
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 26736803 - 26736515
Alignment:
| Q |
15 |
ggttagggagaaaagnnnnnnngtactagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaa |
114 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26736803 |
ggttagggagaaaagaagaaaagtactagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaa |
26736704 |
T |
|
| Q |
115 |
actttggcaaatgttgcattggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgttgagaggctctcctaagtcattaacataa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26736703 |
actttggcaaatgttgcattggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgttgagaggctctcctaagtcattaacataa |
26736604 |
T |
|
| Q |
215 |
ctattgatggcattcacaatgagtaaccatctctcctgtttacaattattcagctgtttcacttcttgtgtttcaattattttctagat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
26736603 |
ctattgatggcattcacaatgagtaaccatctctcctgtttacaattattcaactgtttcacttcttgggtttcaattattttctagat |
26736515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 26713567 - 26713329
Alignment:
| Q |
15 |
ggttagggagaaaagnnnnnnngtactagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaa |
114 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26713567 |
ggttagggagaaaagaaaaaaagtactagaagttggttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaa |
26713468 |
T |
|
| Q |
115 |
actttggcaaatgttgcattggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgttgagaggctctcctaagtcattaacataa |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |
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| T |
26713467 |
actttggcaaatgttgcattggattgtgtacaggaagagaaagatgttagacccaccataagtcaagttgttgagagg--ctcctaagtcatcaacataa |
26713370 |
T |
|
| Q |
215 |
ctattgatggcattcacaatgagtaaccatctctcctgttt |
255 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||||||| |
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|
| T |
26713369 |
ctattaatggcaagtgcaatgaataaccatctctcctgttt |
26713329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 51 - 303
Target Start/End: Complemental strand, 26733542 - 26733292
Alignment:
| Q |
51 |
ttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcattggattgtgtacaggaa |
150 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
26733542 |
ttgttgggttgaggaaattgctgaccctaaattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgctttggattgtgtggctgaa |
26733443 |
T |
|
| Q |
151 |
gataaagatgttagacccaccatgagtcaagttgttgagaggctctcctaagtcattaacataactattgatggcattcacaatgagtaaccatctctcc |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |
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| T |
26733442 |
gagaaagatgttagacccaccatgagtcaagttgttgagagg--ctcctaagtcattaacataactattaatggcatgcacaatgaataaccatctctcc |
26733345 |
T |
|
| Q |
251 |
tgtttacaattattcagctgtttcacttcttgtgtttcaattattttctagat |
303 |
Q |
| |
|
| |||| |||||||| |||||||||| ||||| |||||||||||||||||| |
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|
| T |
26733344 |
ttattactattattcaactgtttcactacttgtaattcaattattttctagat |
26733292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 51 - 255
Target Start/End: Complemental strand, 26698379 - 26698177
Alignment:
| Q |
51 |
ttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcattggattgtgtacaggaa |
150 |
Q |
| |
|
|||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
26698379 |
ttgttgggttgaggaaattgctgaccctaaattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgctttggattgtgtgtctgaa |
26698280 |
T |
|
| Q |
151 |
gataaagatgttagacccaccatgagtcaagttgttgagaggctctcctaagtcattaacataactattgatggcattcacaatgagtaaccatctctcc |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||| |||||||| ||||||||||||| |
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|
| T |
26698279 |
gagaaagatgttagacccaccatgagtcaagttgttgagagg--ctcataagtcattaacatacctattaatggcatgcacaatgaataaccatctctcc |
26698182 |
T |
|
| Q |
251 |
tgttt |
255 |
Q |
| |
|
||||| |
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|
| T |
26698181 |
tgttt |
26698177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 90 - 303
Target Start/End: Complemental strand, 26692090 - 26691879
Alignment:
| Q |
90 |
aaattatgatgcaaagagaatggaaactttggcaaatgttgcattggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgttgag |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
26692090 |
aaattatgatgcaaagagaatggaaactttgacaaatgttgctttggattgtgtggctgaagaaaaagatgttagacctaccatgagtcaagttgttgag |
26691991 |
T |
|
| Q |
190 |
aggctctcctaagtcattaacataactattgatggcattcacaatgagtaaccatctctcctgtttacaattattcagctgtttcacttcttgtgtttca |
289 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |||| |||||||| |||||||||||||||| |||| |
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| T |
26691990 |
aggctca--taagtcattaacataactattaatggcatgcacaatgaataaccatctctccttattactattattcaactgtttcacttcttgtaattca |
26691893 |
T |
|
| Q |
290 |
attattttctagat |
303 |
Q |
| |
|
|||||||||||||| |
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|
| T |
26691892 |
attattttctagat |
26691879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 26743788 - 26743635
Alignment:
| Q |
41 |
tagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcattggattg |
140 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| ||||||| |||||||| |
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|
| T |
26743788 |
tagaagttggttgttgggttgagcaaattgttgaccctaaattgggatcaaattatgatgtaaagaagatggagactttggcagatgttgctttggattg |
26743689 |
T |
|
| Q |
141 |
tgtacaggaagataaagatgttagacccaccatgagtcaagttgttgagaggct |
194 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26743688 |
tgtaaaggaagagaaagatgttagacccaccatgagtcaagttgttgagaggct |
26743635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 26750713 - 26750560
Alignment:
| Q |
41 |
tagaagttgcttgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcattggattg |
140 |
Q |
| |
|
||||||||| ||||||||| | | ||||||| ||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||| |||||||| |
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|
| T |
26750713 |
tagaagttggttgttgggtggcacaaattgtagacccaaaattgggatcaaattatgatgtaaagaagatggagacattggcaaatgttgctttggattg |
26750614 |
T |
|
| Q |
141 |
tgtacaggaagataaagatgttagacccaccatgagtcaagttgttgagaggct |
194 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26750613 |
tgtacaagaagataaagatgttagacctaccatgagtcaagttgttgagaggct |
26750560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 26675082 - 26675020
Alignment:
| Q |
133 |
ttggattgtgtacaggaagataaagatgttagacccaccatgagtcaagttgttgagaggctc |
195 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26675082 |
ttggattgtgtagagaaagagaaagatgttagacccaccatgagtcaagttgttgagaggctc |
26675020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 303
Target Start/End: Complemental strand, 26713334 - 26713299
Alignment:
| Q |
268 |
ctgtttcacttcttgtgtttcaattattttctagat |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26713334 |
ctgtttcacttcttgtgtttcaattattttctagat |
26713299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 26692300 - 26692269
Alignment:
| Q |
164 |
gacccaccatgagtcaagttgttgagaggctc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26692300 |
gacccaccatgagtcaagttgttgagaggctc |
26692269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 26675163 - 26675117
Alignment:
| Q |
52 |
tgttgggttgaagaaattgttgaccctgcattgggatcaaattatga |
98 |
Q |
| |
|
|||||| ||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
26675163 |
tgttggattgaacaaatagttgaccctgcattgggattaaattatga |
26675117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 18658297 - 18658185
Alignment:
| Q |
52 |
tgttgggttgaagaaattgttgaccctgcattgggatcaaattatgatgcaaagagaatggaaactttggcaaatgttgcattggattgtgtacaggaag |
151 |
Q |
| |
|
|||||||||||||||||| | || |||||| |||| | |||| |||| ||| | |||||| |||||| || ||||| |||||||||||| |||||| |
|
|
| T |
18658297 |
tgttgggttgaagaaattatggatcctgcaatggggaccaattgtgatttaaataagatggaagttttggctaaagttgctttggattgtgtagaggaag |
18658198 |
T |
|
| Q |
152 |
ataaagatgttag |
164 |
Q |
| |
|
||| |||| |||| |
|
|
| T |
18658197 |
atagagatattag |
18658185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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