View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_high_24 (Length: 264)
Name: NF13561_high_24
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 55907123 - 55906949
Alignment:
| Q |
73 |
agtatggttacgaacttgagtgtgta--aaatgtgtgacaaaatcaaggattcagcgagaaatactaaaagagttcaaacttgagtatagttacgaattt |
170 |
Q |
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| T |
55907123 |
agtatggttacgaacttgagtgtgtataaaatgtgtgacaaaatcaaggattcagcgagaaatactaaaagagttcaaacttgagtatagttacgaattt |
55907024 |
T |
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| Q |
171 |
gacggcatttgagaatattcattcaagaagagtgttgggtacaattcttcctagagaaataaatactacatgtag |
245 |
Q |
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| T |
55907023 |
gacggcatttgagaatattcattcaagaagagtgttgtgtacacttcttcctagagaaataaatactacatgtag |
55906949 |
T |
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Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 1035875 - 1035696
Alignment:
| Q |
69 |
gacaagtatggttacgaacttgagtgtgtaaaatgtgtgacaaaatcaaggattcagcgagaaatactaaaagagttcaaacttgagtatagttacgaat |
168 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1035875 |
gacaagtatggttacgaacttgagtgtttaaaatgtgtgacaaaatcaaggattcagtgagaaatactaaaagagttcaaacttgagtatagttacgaat |
1035776 |
T |
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| Q |
169 |
ttgacggcatttgagaatattcattcaagaagagtgttgggtacaattcttcctagagaaataaatactacatgtagttg |
248 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |
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| T |
1035775 |
ttgaaggcatttgagaatattcattcaagaagagtgttgggtatacttcttcctagagaaataaacactacatgtagttg |
1035696 |
T |
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