View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_high_32 (Length: 238)

Name: NF13561_high_32
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13561_high_32
NF13561_high_32
[»] chr8 (3 HSPs)
chr8 (131-223)||(4509741-4509833)
chr8 (1-88)||(4509610-4509697)
chr8 (141-216)||(43209070-43209145)
[»] chr2 (1 HSPs)
chr2 (131-223)||(43434665-43434757)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 4509741 - 4509833
Alignment:
Q  131 agtggatatactttgttgagagatccacatttcaataaaggactggccttcaccgagaaagagagggatgcacactacttgcgtggtcttctt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4509741 agtggatatactttgttgagagatccacatttcaataaaggactggccttcaccgagaaagagagggatgcacactacttgcgtggtcttctt 4509833  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4509610 - 4509697
Alignment:
Q  1 taatttcgtttcgagtagattattttaaaattttgttaatttcatggaacgaattgtctcattccaaaagactaaagtgatgattcaa 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4509610 taatttcgtttcgagtagattattttaaaattttgttaatttcatggaacgaattgtctcattccaaaagactaaagtgatgattcaa 4509697  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 43209145 - 43209070
Alignment:
Q  141 ctttgttgagagatccacatttcaataaaggactggccttcaccgagaaagagagggatgcacactacttgcgtgg 216  Q
    ||||| |||| |||||||| | ||| ||||| || || ||||||||||||||||||||||| || || ||||||||    
T  43209145 ctttgctgagggatccacaatacaacaaagggcttgctttcaccgagaaagagagggatgcgcattatttgcgtgg 43209070  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 43434757 - 43434665
Alignment:
Q  131 agtggatatactttgttgagagatccacatttcaataaaggactggccttcaccgagaaagagagggatgcacactacttgcgtggtcttctt 223  Q
    ||||| ||||| |||||| |||||||||| ||||| |||||  |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  43434757 agtggttatacattgttgcgagatccacacttcaacaaagggttggccttcactgaaaaagagagggatgcacactacttgcgtggtcttctt 43434665  T

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