View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_high_4 (Length: 694)
Name: NF13561_high_4
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 564
Target Start/End: Original strand, 26555338 - 26555888
Alignment:
| Q |
14 |
catcagaagaatttattacagtaacatagtaatcacaatcccttctaacatggatgatggaactagcagaactcaattcattcaagtcctcattaaatcc |
113 |
Q |
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| T |
26555338 |
catcagaagaatttattacagtaacatagtaatcacaatcccttctaacatggatgatggaactagcagaactcaattcattcaagtcctcattaaatcc |
26555437 |
T |
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| Q |
114 |
atagttttatttacttcattctcacctaaaaccttagataaatgctacgtactggtaaaggagaaccagatacaatggtttagtaaaacagtcacagtag |
213 |
Q |
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| T |
26555438 |
atagttttatttacttcattctcacctaaaaccttagataaatgctacgtactggtaaaggagaaccagatacaatggtttagtaaaacagtcacagtgg |
26555537 |
T |
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| Q |
214 |
ttaactggcataacaagattggaaacttctctaacaaagatccgttgaaaaattttaaggcacagctaacatagcttaggatgtatatatcagtatcgtc |
313 |
Q |
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| T |
26555538 |
ttaactggcataacaaaattgaaaacttctctaacaaagatccgttgaaaaattttaaggcacagctaacatagcttaggatgtatatatcagtatcgtc |
26555637 |
T |
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| Q |
314 |
aaatagcggctgtagtggcactatatcactatataggtatcgcatagcagaatttgaacaaattgctatgattttgtgctacac------gtacaaggtg |
407 |
Q |
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| T |
26555638 |
aaatagcggctttagtggcactatatcactatata------gcatagcagaatttgaacaaattgctatgattttgtgctacactattaagtacaaggtg |
26555731 |
T |
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| Q |
408 |
ttgtcaaatagcgactataacattgtagccagtgttattgatgggggaaagccaaaaatccgtcattttaatcattcatatccaccataaaacactatga |
507 |
Q |
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| T |
26555732 |
ttgtcaaatagcgactataacaatgtagccagtgttattgatgggggaaagccaaaaatccgtcattttaatcatccatatccaccataaaacactatga |
26555831 |
T |
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| Q |
508 |
tgccctctaccaattggatatggcggttgtccaaaaatctgttaccgcaatccgtca |
564 |
Q |
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| T |
26555832 |
tgccttttaccaattggatatggtggttgtccaaaaatctgttaccgcaatccgtca |
26555888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 561 - 678
Target Start/End: Original strand, 26556119 - 26556237
Alignment:
| Q |
561 |
gtcacgtgacccaaaaagctaacatcaggaactaaaagcaatacttttgaatttgcagagatttaatccaat-caaaaaaccttacaagattaaaaccaa |
659 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |
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| T |
26556119 |
gtcacgtgacccaataagctaacatcaagaactaaaagcaatacttttgaatttgcagagatttaatccaataaaaaaaaacttacaagactaaaaccaa |
26556218 |
T |
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| Q |
660 |
aaaacgctatagttgcaag |
678 |
Q |
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| T |
26556219 |
aaaacattatagttgcaag |
26556237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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