View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_10 (Length: 433)
Name: NF13561_low_10
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 51462328 - 51461923
Alignment:
| Q |
11 |
atcatcaataacatatgtaagttaaagttaacaacaaatatacaaagttgttaaattctcgtaaccgaacacaatttgtatgcaaactaaattggaatga |
110 |
Q |
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| T |
51462328 |
atcatcaataacatatgtaagttaaagttagcaacaaatatacaaagttgttaaattctcataaccaaacacaatttgtatgcaagctaaattggaatga |
51462229 |
T |
|
| Q |
111 |
aacatgttaacatatacaattgcaactttctcaataacataacatatataaatgttactgctatcatttaagattaaacacaatttttataatcaaagaa |
210 |
Q |
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| T |
51462228 |
aacatgttaacatatgcaattgcaactttctcaataacataacatatataaatgttactgctatcatttaagattaaacacaatttttataatcaaagaa |
51462129 |
T |
|
| Q |
211 |
tataagtacgttgaagtaaaagtttgtataaacattattagcaataactatagaagaattaagaatgttgcgatgacacagtataaacttttacttataa |
310 |
Q |
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| T |
51462128 |
tataagtacgttgaagtaaaagtttgtataaaaattattagtaatatttatagaagaattaagaatgttgcgatgacacggtataaacttttacttataa |
51462029 |
T |
|
| Q |
311 |
actcttgagtgacaaagaatgttgatattaaacataaacttttacttacgataccaacatcatattcaatgcaaaatgctctcatcttaatcaaatcatc |
410 |
Q |
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| T |
51462028 |
actcttgagtgacaaagaatgttgatattaaacataaacttttacttacaataccaacatcatattcaatgcaaaatgctctcatcttaatcaaatcatc |
51461929 |
T |
|
| Q |
411 |
acaaac |
416 |
Q |
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|||||| |
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| T |
51461928 |
acaaac |
51461923 |
T |
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