View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_11 (Length: 421)
Name: NF13561_low_11
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 47636570 - 47636178
Alignment:
| Q |
13 |
aatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataatcttgtaac |
112 |
Q |
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| T |
47636570 |
aatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgcgcaatccctccaataatcttgtaac |
47636471 |
T |
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| Q |
113 |
gccttgtccaatccaacagcctttgtttttcaggatctgaataaattttctattcataagactatgatccccgataaaagtaaaccagtttaatgaaaca |
212 |
Q |
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| T |
47636470 |
gccttgtccaatccaacagcctttgtttttcaggatctgcataaattttctattcataagactatgatccccgataaaagtaaaccagtttaatgaaaca |
47636371 |
T |
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| Q |
213 |
gaaatttgacaaaagaattcaattgcacagttttctcatgtgaagtgtgcactataaagagttcagataagatgcacctaccaaaaagaatatagtcgag |
312 |
Q |
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| T |
47636370 |
gaaatttgacaaaagaattcaattgtacagttttctcatgtgaagtgtgcactataaagagttcagataagatgcacctaccaaaaagaatatagtcgag |
47636271 |
T |
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| Q |
313 |
gcttttgttggccacaaattcataaacaagtatcttttcttctctttccaagcaaaatcctagaagcctagctaaatttctatgttgaagttg |
405 |
Q |
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| T |
47636270 |
gcttttgttggccacaaattcataaacaagtatcttttcttctctttccaagcaaaatcctagaagcctagctaaatttctatgttgaagttg |
47636178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 404
Target Start/End: Complemental strand, 47287313 - 47287192
Alignment:
| Q |
283 |
gatgcacctaccaaaaagaatatagtcgaggcttttgttggccacaaattcataaacaagtatcttttcttctctttccaagcaaaatcctagaagccta |
382 |
Q |
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| T |
47287313 |
gatgcacacaccaaatagaaaatagtctagacttttgttgggcatgaattcataaatgagcatcttttcttcaccatccaagcaaaacccaagaatccta |
47287214 |
T |
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| Q |
383 |
gctaaatttctatgttgaagtt |
404 |
Q |
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| | |||||| ||||| |||| |
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| T |
47287213 |
acaagatttctgtgttgtagtt |
47287192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 47568304 - 47568239
Alignment:
| Q |
44 |
taattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataatcttgt |
109 |
Q |
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| T |
47568304 |
taattttaaggcgtgaatcctcatggagataaagaattcctcgagcaattcctccaataatcttgt |
47568239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36376347 - 36376261
Alignment:
| Q |
18 |
gttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat |
104 |
Q |
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| T |
36376347 |
gttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat |
36376261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36429392 - 36429306
Alignment:
| Q |
18 |
gttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat |
104 |
Q |
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| T |
36429392 |
gttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat |
36429306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 36389568 - 36389512
Alignment:
| Q |
39 |
atgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccc |
95 |
Q |
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| T |
36389568 |
atgaatgattttcagccttgaatcttgatgaagatataaaacgcctcgagcaatccc |
36389512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 28419916 - 28419879
Alignment:
| Q |
55 |
ctagaatcttcatgaagatattgaatgcctcgagcaat |
92 |
Q |
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| T |
28419916 |
ctagaatcttgatgaagatattgaattcctcgagcaat |
28419879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 28433149 - 28433112
Alignment:
| Q |
55 |
ctagaatcttcatgaagatattgaatgcctcgagcaat |
92 |
Q |
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| T |
28433149 |
ctagaatcttgatgaagatattgaattcctcgagcaat |
28433112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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