View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_low_12 (Length: 410)

Name: NF13561_low_12
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13561_low_12
NF13561_low_12
[»] chr8 (2 HSPs)
chr8 (17-404)||(19785697-19786084)
chr8 (85-145)||(16401048-16401108)
[»] chr2 (2 HSPs)
chr2 (82-381)||(25534181-25534480)
chr2 (72-344)||(32441988-32442263)
[»] chr7 (2 HSPs)
chr7 (17-164)||(20581328-20581475)
chr7 (84-383)||(13250517-13250816)
[»] chr3 (2 HSPs)
chr3 (72-351)||(19577120-19577402)
chr3 (17-80)||(8772429-8772492)
[»] chr6 (3 HSPs)
chr6 (264-383)||(28586712-28586831)
chr6 (63-143)||(17884530-17884610)
chr6 (63-167)||(28586934-28587038)
[»] chr1 (2 HSPs)
chr1 (82-295)||(18829396-18829611)
chr1 (327-383)||(18829623-18829679)


Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 19785697 - 19786084
Alignment:
Q  17 ctttcttatcaaagatgatggaatgctttcacttggaccacgccatgcttttttaatggacaacgtcccaatagaattgaaacttcctgggttcttcttc 116  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19785697 ctttcttatcaaagatgatgtaatgctttcacttggaccacgccatgcttttttaatggacaacttcccaatagaattgaaacttcctgggttcttcttc 19785796  T
Q  117 tttagaggtaactgtccttgagatattgcattacaatttctagttaatgtagccaagtcttctctcttcaacttttggggatatgatattttgatgaagt 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19785797 ttttgaggtaactgtccttgagatattgcattacaatttctagttaatgcagccaagtcttctctcttcaacttttggggatatgatattttgatgaagt 19785896  T
Q  217 caaggagtttgctaggattctcatttttatcaaggatttgtcgtatactcattcttaaaatggaatctttgtctacaagaggctcgaacatttgggcatt 316  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19785897 caaggagtttgctaggattctcatttttatcaaggatttatcgtatgctcattcttaaaatggaatctttgtctacaagaggctcgaacatttggccatt 19785996  T
Q  317 ctgcttctctttgaactgagcttgaagtgttgatttcactcctagagcttcgtccttcttaagatgaactcatgacaattggtcacga 404  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19785997 ctgcttctctttgaactgagcttaaagtgttgatttcactcctagagcttcgtccttcttaagatgaacttatgacaattggtcacga 19786084  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 16401048 - 16401108
Alignment:
Q  85 caatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgc 145  Q
    |||||||||||||||||||  ||| ||||||||||||||||||  |||||||| |||||||    
T  16401048 caatagaattgaaacttccaaggtccttcttctttagaggtaatcgtccttgaaatattgc 16401108  T

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Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 82 - 381
Target Start/End: Original strand, 25534181 - 25534480
Alignment:
Q  82 tcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagttaatgtagccaagtcttctct 181  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||| |||||||| ||| ||| |||||| ||||    ||||||| || ||||| |||    
T  25534181 tcccaatagaattgaaacttccagggcccttcttctttagaggtaaccgtccttgaaatagtgccttacaacttctgtcaaatgtagtcatgtcttttct 25534280  T
Q  182 cttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcgtatactcattcttaaaatggaa 281  Q
    ||||| |||||||| ||| || |  | ||| |||| | ||||| ||| ||| |||||| ||| |||||| ||||||||| ||||||||||||||||||||    
T  25534281 cttcatcttttgggaatacgacaactggataaagttagggagtctgcaagggttctcactttcatcaagaatttgtcgtctactcattcttaaaatggaa 25534380  T
Q  282 tctttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagtgttgatttcactcctagagcttcgtccttcttaagat 381  Q
    ||||| ||  ||| ||||||||| ||| ||| ||||| ||||||||||||||| |||||||||||||||| |||||||||  |||| |||||||||||||    
T  25534381 tctttatcgtcaataggctcgaatattagggtattcttcttctctttgaactgggcttgaagtgttgattgcactcctagcacttcttccttcttaagat 25534480  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 72 - 344
Target Start/End: Complemental strand, 32442263 - 32441988
Alignment:
Q  72 atggacaacgtcccaatagaattgaaacttcctgggttcttc---ttctttagaggtaactgtccttgagatattgcattacaatttctagttaatgtag 168  Q
    ||||||||| ||||||||||||||||||||| |||||  ||    || ||| |||||  | |||||||| ||||||||||||  || |  |||| |||||    
T  32442263 atggacaacttcccaatagaattgaaacttcttgggtcattactattattttgaggttgccgtccttgaaatattgcattacggttcccggttagtgtag 32442164  T
Q  169 ccaagtcttctctcttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcgtatactcat 268  Q
       | ||||||||||||||||| |||||||||||||  || | | ||| | |||  | || |||||||||| |||  ||||||||||||| | |||||||    
T  32442163 tagattcttctctcttcaacttatggggatatgataaatttacgtagtaagggatctcgcgaggattctcactttcttcaaggatttgtcatctactcat 32442064  T
Q  269 tcttaaaatggaatctttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagt 344  Q
    ||| ||||||||||||| ||| |||||||||| ||||||| |||||||| |||||||||||||||| | |||||||    
T  32442063 tctcaaaatggaatcttcgtcaacaagaggcttgaacattggggcattcagcttctctttgaactgggtttgaagt 32441988  T

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Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 20581328 - 20581475
Alignment:
Q  17 ctttcttatcaaagatgatggaatgctttcacttggaccacgccatgcttttttaatggacaacgtcccaatagaattgaaacttcctgggttcttcttc 116  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||  ||||||| | |||||||    
T  20581328 ctttcttatcagagatgatggaatactttcacttggaccacaccatgcttttttaatggacaacttcccaatagaattgaaggttcctggctccttcttc 20581427  T
Q  117 tttagaggtaactgtccttgagatattgcattacaatttctagttaat 164  Q
     || ||||||||   | ||||||||||||||||||| |||| ||||||    
T  20581428 gtttgaggtaaccaccattgagatattgcattacaacttctggttaat 20581475  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 383
Target Start/End: Complemental strand, 13250816 - 13250517
Alignment:
Q  84 ccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagttaatgtagccaagtcttctctct 183  Q
    |||||||||||||||||||| |||| |||||||||||| ||||| ||||||||| ||||||| |||||| | |  |  |||| |  |   |||| |||||    
T  13250816 ccaatagaattgaaacttccagggtccttcttctttaggggtaattgtccttgaaatattgctttacaactcccggcaaatgcaatcggatcttttctct 13250717  T
Q  184 tcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcgtatactcattcttaaaatggaatc 283  Q
    ||||||| ||||||||  | |  ||||| || ||| ||| | |||  || |||||| ||| |||||| |||||  || ||||  |||||||||| |||||    
T  13250716 tcaacttgtggggatacaacaacttgataaactcagggattctgcaggggttctcactttcatcaagaatttgatgtttacttgttcttaaaatagaatc 13250617  T
Q  284 tttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagtgttgatttcactcctagagcttcgtccttcttaagatga 383  Q
    |||||| |||| |||| |||||||| ||| |||||||| |||||||||||| | ||| ||||||| || ||||||||| ||||  ||| |||||||||||    
T  13250616 tttgtcgacaaaaggcccgaacattggggaattctgctcctctttgaactgggattgtagtgttgtttgcactcctagcgcttattccatcttaagatga 13250517  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 351
Target Start/End: Complemental strand, 19577402 - 19577120
Alignment:
Q  72 atggacaacgtcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagtt---aatgtag 168  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||| ||||||   ||||||| ||||||| |||||  ||||  |    |||||||    
T  19577402 atggacaacttcccaatagaattgaaacttctagggttcttcttctttaaaggtaatcatccttgaaatattgccttacagcttcttctggaaaatgtag 19577303  T
Q  169 ccaagtcttctctcttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcgtatactcat 268  Q
      |  |||| |||||| ||||| |||| ||  || |  | | | |||| | ||||||||| ||| |||||| ||| |||||  ||||||||| |||||||    
T  19577302 ttagatcttttctctttaacttctgggaattcgacaactggctaaagttagggagtttgcaagggttctcactttaatcaataatttgtcgtctactcat 19577203  T
Q  269 tcttaaaatggaatctttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagtgttgatt 351  Q
    | ||||||||||||||||||| |||| ||||  ||| ||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  19577202 tattaaaatggaatctttgtcgacaataggcatgaatattggggtattctgcttctctttgaactgggcttgaagtgttgatt 19577120  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 8772429 - 8772492
Alignment:
Q  17 ctttcttatcaaagatgatggaatgctttcacttggaccacgccatgcttttttaatggacaac 80  Q
    |||||||| || ||||||||||||||||||||   ||| || ||||||||||||||||||||||    
T  8772429 ctttcttaccagagatgatggaatgctttcaccctgactacaccatgcttttttaatggacaac 8772492  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 383
Target Start/End: Complemental strand, 28586831 - 28586712
Alignment:
Q  264 ctcattcttaaaatggaatctttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagtgttgatttcactcctagag 363  Q
    |||| ||| ||||||||| |||| || |||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||| |||||| ||||| |    
T  28586831 ctcactctcaaaatggaagctttatcaacaagaggctcgaacattggggcattctgcttctctttgaactgggtttgaactgttggtttcacacctagcg 28586732  T
Q  364 cttcgtccttcttaagatga 383  Q
    |||| |||||||||||||||    
T  28586731 cttcttccttcttaagatga 28586712  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 17884610 - 17884530
Alignment:
Q  63 gcttttttaatggacaacgtcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatatt 143  Q
    |||| ||| ||| ||||| |||||||||||||||||||||| |||| |||||||||| ||||||||| | ||||| |||||    
T  17884610 gcttcttttatgaacaacttcccaatagaattgaaacttccagggtccttcttctttggaggtaactatgcttgaaatatt 17884530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 167
Target Start/End: Complemental strand, 28587038 - 28586934
Alignment:
Q  63 gcttttttaatggacaacgtcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagtta 162  Q
    |||| ||| ||| ||||| | |||||||||||||||||||||||   ||||||  || |||||| | |||||||| |||| ||||| || ||||| ||||    
T  28587038 gcttcttttatgaacaactttccaatagaattgaaacttcctggacccttcttagtttgaggtagccgtccttgaaatatggcatttcagtttctggtta 28586939  T
Q  163 atgta 167  Q
     ||||    
T  28586938 gtgta 28586934  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 82 - 295
Target Start/End: Original strand, 18829396 - 18829611
Alignment:
Q  82 tcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagttaatgtagccaagtcttctct 181  Q
    |||||||||||||||||||||| | || ||||||||||| ||||| |||||||||| ||||||  |||||  |||  |  |||| || || || || |||    
T  18829396 tcccaatagaattgaaacttccagagtccttcttctttaaaggtatctgtccttgaaatattgtcttacagcttccggcaaatgcagtcaggtattttct 18829495  T
Q  182 cttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcg--tatactcattcttaaaatgg 279  Q
    ||||||||| ||||||||||| |  ||||| |||||| ||| | ||| |||  | | | ||| |||||| |||| |||  || |||||||||||||||||    
T  18829496 cttcaacttatggggatatgacaacttgataaagtcagggaatctgcaaggtctattactttcatcaagaatttttcgtctacactcattcttaaaatgg 18829595  T
Q  280 aatctttgtctacaag 295  Q
    || ||||||| |||||    
T  18829596 aacctttgtcaacaag 18829611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 18829623 - 18829679
Alignment:
Q  327 ttgaactgagcttgaagtgttgatttcactcctagagcttcgtccttcttaagatga 383  Q
    |||||||| ||||||||||||| || ||||||||| ||||| ||||||||| |||||    
T  18829623 ttgaactgggcttgaagtgttggttgcactcctagtgcttcttccttcttatgatga 18829679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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