View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_13 (Length: 386)
Name: NF13561_low_13
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 9849969 - 9850328
Alignment:
| Q |
11 |
catcatcaggtctggcttcaatccttgaactacttgccttatgtctctcattttcttttttctttcagatgttgttgaaaactatactttcactgtatcg |
110 |
Q |
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| T |
9849969 |
catcatcagggctggcttcaatccttgaactacttgccttatgtctctcattttcttttttctttcagatgttgttgaaaactatactttcactgtatcg |
9850068 |
T |
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| Q |
111 |
aagaaatgaaatattataagtaaaatgatatcaagttatggatctttaattatcactgatcaaattttaataatttaattatttactaaagtttgtttgt |
210 |
Q |
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| T |
9850069 |
aagaaatgaaatattataagtaaaatgatatcaagttatggatctttaattatcactgatcaaattttaataatttaattatttactaaagtttgtttgt |
9850168 |
T |
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| Q |
211 |
ttctttagtagaaaggggaaagtgtggtttggctccaacattggtaccaagtttccatatatcacaacttatgtttttaaaggacgaattagacctatga |
310 |
Q |
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| T |
9850169 |
ttctttagtagaaaggggaaagtgtggtttggctccaacattggtaccaagtttccatatatcacaacttatgtttttaaaggacgaattagacctatga |
9850268 |
T |
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| Q |
311 |
tttataaaaaatatagggcaacaagttcacatttacatagagcatctgaaatcttagaaa |
370 |
Q |
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| T |
9850269 |
cttaaaaaaaatatagggcaacaagttcatatttacataaagcttctgaaatcttagaaa |
9850328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 9838113 - 9838239
Alignment:
| Q |
22 |
ctggcttcaatccttgaactacttgccttatgtctctcattttcttttttctttcagatgttgttgaaaactatactttcactgtatcgaagaaatgaaa |
121 |
Q |
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| T |
9838113 |
ctggcttcaatccttgcattacttgccttatgtctcccatttt-ttctttctttcaggtgttgttgaaaactatactttcactagattgaagaaattaaa |
9838211 |
T |
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| Q |
122 |
tattataagtaaaatgatatcaagttat |
149 |
Q |
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| T |
9838212 |
tagtataagtaaaatcatatgaagttat |
9838239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 1227219 - 1227278
Alignment:
| Q |
10 |
acatcatcaggtctggcttcaatccttgaactacttgccttatgtctctcattttctttt |
69 |
Q |
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||||||||| | ||||||||||||| || ||||||| |||||| |||||||||||||||| |
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| T |
1227219 |
acatcatcatggctggcttcaatccatgcactactttccttatatctctcattttctttt |
1227278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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