View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_low_14 (Length: 379)

Name: NF13561_low_14
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13561_low_14
NF13561_low_14
[»] chr1 (1 HSPs)
chr1 (91-273)||(51386692-51386874)
[»] chr3 (2 HSPs)
chr3 (168-256)||(14174936-14175024)
chr3 (166-256)||(952378-952468)
[»] scaffold0007 (1 HSPs)
scaffold0007 (166-256)||(257984-258074)
[»] chr7 (2 HSPs)
chr7 (194-256)||(11637602-11637664)
chr7 (173-252)||(40723021-40723101)
[»] chr4 (2 HSPs)
chr4 (166-223)||(10714899-10714955)
chr4 (166-223)||(10928669-10928725)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 91 - 273
Target Start/End: Original strand, 51386692 - 51386874
Alignment:
Q  91 catgatccacacaacaacgattgagatggagaataaattttgtaccttgtgagcttttaaattaggagatggagaagaaagggtaaaccaaaggagaaga 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386692 catgatccacacaacaacgattgagatggagaataaattttgtaccttgtgagcttttaaattaggagatggagaagaaagggtaaaccaaaggagaaga 51386791  T
Q  191 aagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcattcttttctggtaaatat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51386792 aagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcattcttttctagtaaatat 51386874  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 14174936 - 14175024
Alignment:
Q  168 aaagggtaaaccaaaggagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcat 256  Q
    |||| |||||||||| |||||||| ||||||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||    
T  14174936 aaagtgtaaaccaaatgagaagaaggaatgtaaatattacctgtgaaaaaattgaaccatgtcgacggaaccttcactgctgcaatcat 14175024  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 952378 - 952468
Alignment:
Q  166 agaaagggtaaaccaaaggagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcat 256  Q
    |||||| |||||||||| |||||||| ||||||||||||||||| |||||| ||||||  |||||||||||| ||||||||||||||||||    
T  952378 agaaagtgtaaaccaaatgagaagaaggaatgtaaatattacctgtgaaaagattgaaccatgtcggcggaatcttcactgctgcaatcat 952468  T

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Target: scaffold0007 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 258074 - 257984
Alignment:
Q  166 agaaagggtaaaccaaaggagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcat 256  Q
    |||||| |||||| ||| |||||||| |||||||||||| |||| |||||||||| ||  |||||||||||||||||||||||||||||||    
T  258074 agaaagtgtaaactaaatgagaagaaggaatgtaaatatcacctgtgaaaaaattaaaccatgtcggcggaaccttcactgctgcaatcat 257984  T

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Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 11637602 - 11637664
Alignment:
Q  194 aatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcat 256  Q
    |||||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||    
T  11637602 aatgtaaatattacctgtgaaaaaattgaaccatgtcggcgtaaccttcactgctgcaatcat 11637664  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 40723101 - 40723021
Alignment:
Q  173 gtaaaccaaaggagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggc-ggaaccttcactgctgcaa 252  Q
    ||||||| || |||||||| ||||||||||||||||| |||||||||| ||  |||||||| | |||||||||||||||||    
T  40723101 gtaaaccgaatgagaagaaggaatgtaaatattacctgtgaaaaaattaaaccatgtcggcagaaaccttcactgctgcaa 40723021  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 10714899 - 10714955
Alignment:
Q  166 agaaagggtaaaccaaaggagaagaaagaatgtaaatattacctatgaaaaaattgaa 223  Q
    |||||| |||||||||| ||||| || |||||||||||||| || |||||||||||||    
T  10714899 agaaagtgtaaaccaaatgagaaaaaggaatgtaaatatta-ctgtgaaaaaattgaa 10714955  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 10928669 - 10928725
Alignment:
Q  166 agaaagggtaaaccaaaggagaagaaagaatgtaaatattacctatgaaaaaattgaa 223  Q
    |||||| |||||||||| ||||| || |||||||||||||| || |||||||||||||    
T  10928669 agaaagtgtaaaccaaatgagaaaaaggaatgtaaatatta-ctgtgaaaaaattgaa 10928725  T

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