View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_15 (Length: 375)
Name: NF13561_low_15
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 32224616 - 32224959
Alignment:
| Q |
9 |
agcacagacaacagtgggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaag |
108 |
Q |
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| T |
32224616 |
agcacagacaactgtgggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaag |
32224715 |
T |
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| Q |
109 |
gctgctgattttgtgcagtccaaaccagaagagccagccaaacctgaaggtgtgattgctggtgctaaaaatgctgttggaggcttatttaagaaatgaa |
208 |
Q |
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| T |
32224716 |
gctgctgattttgtgcagtccaaaccagaagagccagccaaacctgaaggtgtgattgctggtgctaaaaatgctgttggaggcttatttaagaaatgaa |
32224815 |
T |
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| Q |
209 |
acatcactgatttcactttagcatcttgtg--------attaattaattaataaggatactaaacttgtcatccattcaagtatgtgtataagttagcac |
300 |
Q |
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| T |
32224816 |
acatcactgatttcactttagcatcctgtgattaattaattaattaattaataaggatactaaacttgtcatcccttcaagtatgtgtataagttagcac |
32224915 |
T |
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| Q |
301 |
tgtgtatcttatcatataaactataggataggatatactaagtt |
344 |
Q |
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| T |
32224916 |
tgtgtatcttatcatataaactataggataggatatactaagtt |
32224959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 32229475 - 32229808
Alignment:
| Q |
9 |
agcacagacaacagtgggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaag |
108 |
Q |
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| T |
32229475 |
agcacagaaaactgtaggaaatgctgcttctggtgcccagaaaactttgggaaatgctgcagctggagttcataagactgtaggagattatgctaccacg |
32229574 |
T |
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| Q |
109 |
gctgctgattttgtgcagtccaaaccagaagagccagccaaacctgaaggtgtgattgctggtgctaaaaatgctgttggaggcttatttaagaaatgaa |
208 |
Q |
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| T |
32229575 |
gctgctaattatgtaaaacccaaaccagatcctattggcaaaaccaaaggtgcggttgatggtgctgcaaagtctgttggaggcttatttaa---atgaa |
32229671 |
T |
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| Q |
209 |
--acatcactgatttcactttagcatcttgtgattaattaattaataaggatactaaacttgtcatccattcaa---gtat-gtgtataagttagcactg |
302 |
Q |
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| T |
32229672 |
caatatcgttgatttcactttaccaagtt-----tgattaattaataaggacactaaacttgccatcccttttaagagtattgtgtataagttagcactg |
32229766 |
T |
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| Q |
303 |
tgtatcttatcatataaactataggataggatatactaagtt |
344 |
Q |
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| T |
32229767 |
tgtatcttatcatataatctataggataggatatactaagtt |
32229808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 32220388 - 32220424
Alignment:
| Q |
305 |
tatcttatcatataaactataggataggatatactaa |
341 |
Q |
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| T |
32220388 |
tatcttatcatgtaatctataggataggatatactaa |
32220424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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