View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13561_low_16 (Length: 372)

Name: NF13561_low_16
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13561_low_16
NF13561_low_16
[»] chr1 (1 HSPs)
chr1 (50-344)||(7812031-7812325)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 50 - 344
Target Start/End: Original strand, 7812031 - 7812325
Alignment:
Q  50 tatcactaaatgaagacatgaaaacatacatatatatggtacagttattttagtcataaaaattcagattttgagagtataaataagtcacaaccaattg 149  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  7812031 tatcactaaatgaagacatgaaaacatacatatatatgttacagttattttagtcataaaaattgagattttgagagtataaataagtcacgaccaattg 7812130  T
Q  150 ctaagcgaattcaacaaattacacatttcaattcacatggtcacttcatctgaacccttgagtttattcaacaaatgcnnnnnnnattcaccttctttaa 249  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||    
T  7812131 ctaagcgaattcaaaaaattacacatttcaattcacatggtcacttcatctggacccttgagtttattcaacaaatgctttttttattcaccttctttaa 7812230  T
Q  250 atttgaatggatggatgggtcaaaatttcagattaaatttaaatggatttgttgactacacaaagttcaaacctgaccaaagagttgtttaaagg 344  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7812231 atttgaatggatggatgggtcaaaacttcagattaaatttaaatggatttgttgactacacaaagttcaaacctgaccaaagagttgtttaaagg 7812325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University