View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13561_low_2 (Length: 895)
Name: NF13561_low_2
Description: NF13561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13561_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 779; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 16 - 895
Target Start/End: Complemental strand, 40514214 - 40513346
Alignment:
| Q |
16 |
tatatatgaagcttttgctcatttgcattttcttgcttcaactat-gtgttctaaaatgcttttacacgttcttgttcgaatattggtatttgatcagaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40514214 |
tatatatgaagcttttgctcatttgcattttcttgcttcaactatagtgttctaaaatgcttttacacgttcttgttcgaatattggtatttgaacagaa |
40514115 |
T |
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| Q |
115 |
taagaatagagtgctaattgccttagcgcgttaccatcatcgatatttgtggccacaatacattaaccaattttttcttgttatctagattcatagtttt |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40514114 |
taagaatagagtgctaattgccttagtgcgttaccatcatcgatatttgtggccacaatacattaaccaattttttcttgttatctagattcatagtttt |
40514015 |
T |
|
| Q |
215 |
ggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataatccaagacctgaaaggtgtgtgtttcctaaattccctcaaataattttca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40514014 |
ggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataatccaagatctgaaaggtgtgt--ttcctaaattccctcaaataattttca |
40513917 |
T |
|
| Q |
315 |
aaattccaagttatttag--ctaattagtcttcaagtttatgaacttttcatattatttttcataggtttgaagatgatcctgaaatatcaaaaattccc |
412 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40513916 |
aaattccaagttatttagtactaattagtcttcaagtttatgaacttttcata------------ggtttgaagatgatcctgaaatatcaaaaattccc |
40513829 |
T |
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| Q |
413 |
acaacaagtggagttaaggtgaaataccacattgatggaacacaaatacctgaacaaagttcgaaaaagtctcgaaagaatgaaacaaggaacaagtttt |
512 |
Q |
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| T |
40513828 |
acaacaagtggagttaaggtgaaataccacattgatggaacacaaatacctgaacaaagttcgaaaaagtctcgaaagaatgaaacaaggaacaagtttt |
40513729 |
T |
|
| Q |
513 |
tgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagttnnnnnnngagtattagtattagatcctaggggacaactcatacatcgttg |
612 |
Q |
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| T |
40513728 |
tgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagttaaaaaaagagtattagtattagatcctaggggacaactcatacatcgttg |
40513629 |
T |
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| Q |
613 |
gaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgccagtggttagagaagaagtttgcattgatattgga |
712 |
Q |
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| T |
40513628 |
gaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgccagtggttagagaagaagtttgcattgatattgga |
40513529 |
T |
|
| Q |
713 |
aaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatttgtatgaagtttcgtacagcttatgttgctcctt |
812 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513528 |
aaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatttgtatgaagtttcgtacagcttatgttgctcctt |
40513429 |
T |
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| Q |
813 |
cttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggtta |
895 |
Q |
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| T |
40513428 |
cttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggtta |
40513346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 799 - 895
Target Start/End: Complemental strand, 40482768 - 40482672
Alignment:
| Q |
799 |
ttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggtta |
895 |
Q |
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| T |
40482768 |
ttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggtta |
40482672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 579 - 844
Target Start/End: Original strand, 21611600 - 21611865
Alignment:
| Q |
579 |
tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc |
678 |
Q |
| |
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|||| ||||||||||||||| ||| || | ||||||||||| || || |||||||||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
21611600 |
tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc |
21611699 |
T |
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| Q |
679 |
agtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatt |
778 |
Q |
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| | ||| ||| ||||| |||||||||||||||| | | |||||||| | |||| | || |||||||| ||| || | |||||| | |||| ||| |
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| T |
21611700 |
aatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggacgtcttttacgtcattcacatt |
21611799 |
T |
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| Q |
779 |
tgtatgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgtt |
844 |
Q |
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| |||| ||||| ||| || |||||||| |||||||| | ||||||||| ||||||||||||||| |
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| T |
21611800 |
ttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgtt |
21611865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 611 - 681
Target Start/End: Original strand, 28261535 - 28261605
Alignment:
| Q |
611 |
tggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgccagt |
681 |
Q |
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|||||||| ||||| |||| ||| ||||| |||| ||||||||||||||||| |||||||| || ||||| |
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| T |
28261535 |
tggaacaaaatattcttagcagcttgtttgatttcattgtttgtggatccacttttcttttacttaccagt |
28261605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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